View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15367_low_4 (Length: 446)
Name: NF15367_low_4
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 38946179 - 38945752
Alignment:
| Q |
18 |
ccatcaaactctctaccctttcctacaacaatgaccaatcttcccacctccaacccattcttattaacctagcaaaccattatgacgattcttttttgta |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
38946179 |
ccatcaaactctcttccctttcctacaacaatgaccaatcttcccacctcaaacccattcttattaacctagcaaaccgttatgacgacttctttttgta |
38946080 |
T |
|
| Q |
118 |
gagataacaatcactgttaaacacaagaaaatcgtagttgtggtgactccaccacaaacacctttggtgccgattccagcacagatggtggtggtagctc |
217 |
Q |
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|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38946079 |
gagataacaaccactattaaacacaagaaaaccgtagttgtggtgactccaccacaaacacctttggtgccgattccagcacagatggtggtggtggctc |
38945980 |
T |
|
| Q |
218 |
caccaaccactatatcagtgaaagaaccgatcacacttcataccattaatgaaaaggatgaaattttgtccnnnnnnntaaatatactgtgaatgtgggg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38945979 |
caccaaccactatatcagtgaaagaaccgatcacacttcataccattaatggaaaggatgaaattttgtccaaaaaaataaatatactgtgaatgtgggg |
38945880 |
T |
|
| Q |
318 |
atggactcgtagggaaaacatgtgtggttgtgtgcaggattgtctagatgttcttatctctatataaaacaaatttgaaccatcaatacaatctaatgat |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38945879 |
atggactcgtagggcaaacatgtgtggttgtgtgcaggattgtctagatgttcttatctctatataaaacaaatttgaaccatcaatacaatctaatgat |
38945780 |
T |
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| Q |
418 |
aaattttttaggtttcaccgacgagaga |
445 |
Q |
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||||||| ||||||||||| | |||||| |
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| T |
38945779 |
aaattttgtaggtttcaccaatgagaga |
38945752 |
T |
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