View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15367_low_5 (Length: 427)
Name: NF15367_low_5
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 408
Target Start/End: Complemental strand, 27813691 - 27813300
Alignment:
| Q |
15 |
cagagacgaaaggatacttgtgtacattggtcggggcagattttgttatgtggtgccactgcagtagataactttacctgaaatattgataactttctga |
114 |
Q |
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| T |
27813691 |
cagagccgaaaggatacttgtgtacattggtcggggctgattttgttatgtagtgccactgcagtagataactttacctgaaatattgataactttctga |
27813592 |
T |
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| Q |
115 |
aatagttttaagaggagctattagaaacctctaatagcgtaaaggtatcctttctgtttgcattgataatattgcatact-----tttagattttttgtt |
209 |
Q |
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| T |
27813591 |
aatagttttaagag---ctattagaaacctccaatagtgtaaaggtatcctttctgtttgcattgataatattgcatactctggttttagattgtttgtt |
27813495 |
T |
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| Q |
210 |
gttagtcgcagattttgattaatttaagattaattaagctctttatcctatatctgcttataaatgatttttgccttatgttcttcaccttcaaatttat |
309 |
Q |
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| T |
27813494 |
gttagtcgcagattttgattaatttaagattaattaagctctttatcctatatctgcttataaatgatttttgccttatgttcttcaccttcaaatttat |
27813395 |
T |
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| Q |
310 |
aaaccaaaagttaattctgtaaaatggttgcatctttgggctttgttttgattttcttgttttcggctgaatcttctttttcacatatttcaggcacac |
408 |
Q |
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| T |
27813394 |
aaaccaaaatttaattctgcaaaa----tgcatctttgggctttgttttgattttcttgttttcggctgcatcttctttttcacatatttcaggcacac |
27813300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 3248382 - 3248305
Alignment:
| Q |
331 |
aaatggttgcatctttgggctttgttttgattttcttgttttcggctgaatcttctttttcacatatttcaggcacac |
408 |
Q |
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| T |
3248382 |
aaatgtttgcatctttgtgctttgttttgattatcttgtttccagctgaatcttcttttgcacatatttcaggcacac |
3248305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 31481744 - 31481696
Alignment:
| Q |
32 |
ttgtgtacattggtcgg-ggcagattttgttatgtggtgccactgcagt |
79 |
Q |
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| T |
31481744 |
ttgtgtacattggtcggaggctgattttgttatgtggtgccactgcagt |
31481696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 6761872 - 6761839
Alignment:
| Q |
151 |
gcgtaaaggtatcctttctgtttgcattgataat |
184 |
Q |
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| T |
6761872 |
gcgtaaaggtaccctttctgtttgcattgataat |
6761839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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