View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15368_high_10 (Length: 264)

Name: NF15368_high_10
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15368_high_10
NF15368_high_10
[»] chr3 (3 HSPs)
chr3 (1-264)||(290516-290779)
chr3 (56-145)||(280207-280296)
chr3 (198-250)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (1-259)||(24532240-24532497)
chr2 (1-259)||(24525568-24525826)
chr2 (198-252)||(42436450-42436504)
chr2 (198-250)||(1979988-1980040)
chr2 (198-250)||(4789262-4789314)
chr2 (200-248)||(16107393-16107441)
chr2 (198-245)||(106466-106512)
chr2 (198-228)||(16549969-16549999)
chr2 (198-259)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (163-252)||(6015787-6015876)
chr7 (163-245)||(13316515-13316596)
chr7 (198-243)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (163-252)||(12252519-12252608)
chr1 (198-258)||(18172642-18172701)
chr1 (163-250)||(18547889-18547976)
chr1 (200-248)||(2981105-2981153)
chr1 (197-251)||(29101796-29101850)
[»] chr8 (2 HSPs)
chr8 (198-250)||(26588155-26588207)
chr8 (163-252)||(11405877-11405965)
[»] chr6 (3 HSPs)
chr6 (198-250)||(7732693-7732745)
chr6 (200-248)||(24585721-24585769)
chr6 (200-250)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (198-250)||(14460178-14460230)
chr5 (198-245)||(29286097-29286143)
[»] chr4 (3 HSPs)
chr4 (198-245)||(4442126-4442173)
chr4 (178-244)||(10266447-10266511)
chr4 (178-244)||(10285472-10285536)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 290516 - 290779
Alignment:
Q  1 tcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290516 tcaaagtatcggaaggtattggattggtgaaaattcatcttttaggttttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttg 290615  T
Q  101 tttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgttaagtgggatcaaggttgcatat 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  290616 tttgaagagctgggtctaggtgaaggccctttcaatgtgtctgtcgacatagttagcaacgaatccaaaaatttcgttaagtgggatcaaggttgcatat 290715  T
Q  201 cataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatcttta 264  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290716 catgaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatcttta 290779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 280207 - 280296
Alignment:
Q  56 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtc 145  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||| | | || |  ||||||||||| |||||||    
T  280207 gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttgatgcaacccctttcaatgcgtctgtc 280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 8354176 - 8354228
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  8354176 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 24532240 - 24532497
Alignment:
Q  1 tcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttg 100  Q
    |||| |||| ||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  24532240 tcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg 24532339  T
Q  101 tttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgttaagtgggatcaaggttgcatat 200  Q
    ||||| ||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||  |||||||||||||  |||||||||||||||||||||  ||    
T  24532340 tttgaggaattgggtctgggtaaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat 24532439  T
Q  201 cataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 259  Q
    ||| |||||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||    
T  24532440 catgaatatttatacagaaatacataaattcataaccaat-aaatgatgacaccattat 24532497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 24525568 - 24525826
Alignment:
Q  1 tcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttg 100  Q
    ||||||||| |||||||||  | |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  24525568 tcaaagtattggaaggtatcagcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg 24525667  T
Q  101 tttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgttaagtgggatcaaggttgcatat 200  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||  |||||||||||||||||||||  ||    
T  24525668 tttgaggaattgggtctgggtgaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat 24525767  T
Q  201 cataaatatttatacaaaa-atatataaatttataaccaataaaatgatgacaccgttat 259  Q
    ||| |||||||||| |||| ||| ||||||| ||||||||| ||||||||||||| ||||    
T  24525768 catgaatatttataaaaaatatacataaattcataaccaat-aaatgatgacaccattat 24525826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 42436504 - 42436450
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 252  Q
    |||||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  42436504 tatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgaca 42436450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 1980040 - 1979988
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  1980040 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 4789262 - 4789314
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  4789262 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 16107393 - 16107441
Alignment:
Q  200 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 248  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  16107393 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 106512 - 106466
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 245  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  106512 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 106466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 16549969 - 16549999
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaa 228  Q
    |||||||||||||||||||||||||||||||    
T  16549969 tatcataaatatttatacaaaaatatataaa 16549999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 3829243 - 3829304
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 259  Q
    ||||||||||| || |||||||| || |||||| ||||| |||||||| |||||||| ||||    
T  3829243 tatcataaatagttttacaaaaacatttaaattcataacaaataaaattatgacaccattat 3829304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 6015876 - 6015787
Alignment:
Q  163 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 252  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6015876 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgaca 6015787  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 13316596 - 13316515
Alignment:
Q  163 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaat 245  Q
    ||||||||||| |  |||||||| ||||  |||  |||| ||||||||||||||||| |||| ||||||||||| ||||||||    
T  13316596 atccagaaatttcaataagtggggtcaatattgtttatcttaaatatttatacaaaa-tatacaaatttataactaataaaat 13316515  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 17257432 - 17257476
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaa 243  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||    
T  17257432 tatcataaatgtttata-aaaaatatataaatttataactaataaa 17257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 12252608 - 12252519
Alignment:
Q  163 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 252  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12252608 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgaca 12252519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 18172701 - 18172642
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgtta 258  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| || |||| |||||    
T  18172701 tatcaaaaatatttatacaaaa-tatataaatttataaccaataaaaagaagacatcgtta 18172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 18547889 - 18547976
Alignment:
Q  163 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||| | | ||||||| ||||| | |  ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  18547889 atccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 2981153 - 2981105
Alignment:
Q  200 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 248  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  2981153 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 29101796 - 29101850
Alignment:
Q  197 atatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgac 251  Q
    |||| ||||||||| ||| ||| |||||||||||||||| | |||||||||||||    
T  29101796 atattataaatattaataaaaatatatataaatttataaacgataaaatgatgac 29101850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 26588155 - 26588207
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  26588155 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 11405965 - 11405877
Alignment:
Q  163 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 252  Q
    ||||||||||| |  |||||||| |||| |||   |||| ||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  11405965 atccagaaatttcaataagtggggtcaaagttatttatcttaaatatttcta-aaaaatatgtaaatttataacaaataaaatgatgaca 11405877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 7732693 - 7732745
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  7732693 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  200 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 248  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 5090494 - 5090544
Alignment:
Q  200 tcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||||||||    
T  5090494 tcataaatatttttacaaaaatctatgaattcataacaaataaaatgatga 5090544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 14460178 - 14460230
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 250  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  14460178 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 29286097 - 29286143
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 245  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  29286097 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 29286143  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 4442126 - 4442173
Alignment:
Q  198 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 245  Q
    ||||||||||||||| ||||||| |||||||| ||||||||| |||||    
T  4442126 tatcataaatatttaaacaaaaaaatataaatctataaccaaaaaaat 4442173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 10266447 - 10266511
Alignment:
Q  178 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 244  Q
    |||||||||||||| | |  ||||||||||||||||  ||||| || ||||||||||||||||||||    
T  10266447 taagtgggatcaagatcgtttatcataaatatttat--aaaaacatttaaatttataaccaataaaa 10266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 10285472 - 10285536
Alignment:
Q  178 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 244  Q
    |||||||||||||| | |  ||||||||||||||||  |||||||| |||||| |||||||||||||    
T  10285472 taagtgggatcaagatcgtttatcataaatatttat--aaaaatatttaaattcataaccaataaaa 10285536  T

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