View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_high_2 (Length: 487)
Name: NF15368_high_2
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 55178830 - 55179248
Alignment:
| Q |
17 |
acaacagacatgtcccttgaaatttctgtatgcatcctgcggagaagtggccaaccaagcttctgtgatgttgataatcttgatgacactttcatctctt |
116 |
Q |
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| T |
55178830 |
acaacagacatgtcccttgaaatttctgtatgcatcctgcggagaagtggccaaccaagcttctgtgatgttgataatcttgatgacactttcatttctc |
55178929 |
T |
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| Q |
117 |
ctttaaatgtttcttcctcccattttctgttaccttcttggcttttcgatttctcatcctcattctccgagtggtctgtgccagatgcagactggaccac |
216 |
Q |
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| T |
55178930 |
ctttaaatgtttcttcctcccattttctgttaccttcttggcttttcgatttctcatcctcattctctgagtggtctgtgccagatgcagactggaccac |
55179029 |
T |
|
| Q |
217 |
cgtgctgataagactcggtctaggatcctctataatgccacttagcataatcatattcatagttggaaacaaatttgctatagtagattttctttgagag |
316 |
Q |
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| T |
55179030 |
cgtgctgataagactcggtctaggatcctctataatgccacctagcataatcatattcatagttggaaacaaatttgctatagtagattttctttgagag |
55179129 |
T |
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| Q |
317 |
caaaaagaaaactaaaacacgttccctataatataaaaacaagacacacgtgcatgaatgtgatac-----aatataatataatattatatactaccaaa |
411 |
Q |
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| T |
55179130 |
caaaaagaaaactaaaacacgttccctataatataaaaacaagacacacgtgcatgaatgtgatacaatataatataatataatattatatactaccaaa |
55179229 |
T |
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| Q |
412 |
ttaaccaaacctattagtt |
430 |
Q |
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| T |
55179230 |
ttaaccaaacctattagtt |
55179248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 55179231 - 55179263
Alignment:
| Q |
441 |
taaccaaacctattagttgtttattatctgtgc |
473 |
Q |
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| T |
55179231 |
taaccaaacctattagttgtttattatctgtgc |
55179263 |
T |
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