View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_high_6 (Length: 404)
Name: NF15368_high_6
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 28214383 - 28214760
Alignment:
| Q |
18 |
aatgtttccaaactcagtgatatctctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctca |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28214383 |
aatgttttcaaactcagtgatatctctgttgcttcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagctca |
28214482 |
T |
|
| Q |
118 |
tgaatccatcgaatagcataaaacagtcccaaaacttcaccaacatctaccgagcaaatcggggaaaaccacattgtttttgcgcgtatgaatcgcccct |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
28214483 |
tgaacccatcgaatagcataaaacagtcccaaaacttcatcaacatctaccgagcaaaccggggaaaaccacattgtttttgcgcgt-tgaatcgcccct |
28214581 |
T |
|
| Q |
218 |
cttcgttacggatacacatgcctatacccaacttgttctcggccattgagaaggaagcgtcgacattgcacttgagccttccacgccgcggttggaaatt |
317 |
Q |
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|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
28214582 |
cttcgtcacagatacacatacctatacccaacttgttctcggccattgagaaggaagcgccgacattgcacttgagacttccacaccgcggttggaaatt |
28214681 |
T |
|
| Q |
318 |
gtttatcatttgtattttattgttttgttaggaatttggtgttgttgtagaaca--atatatataatcatatgcctttg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28214682 |
gtttatcatttgtattttattgttttgttaggaatttggtgttgttgtagaacaatatatatataatcatatgcctttg |
28214760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 39533670 - 39533378
Alignment:
| Q |
18 |
aatgtttccaaactcagtgatatctctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctca |
117 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39533670 |
aatgtttccaaactcagtgatagctctattgcttcggttaaaataatttgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagctca |
39533571 |
T |
|
| Q |
118 |
tgaatccatcgaatagcataaaacagtcccaaaacttcaccaacatctaccgagcaaatcggggaaaaccacattgtttttgcgcgtatgaatcgcccct |
217 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39533570 |
tgaacccatcgaatagcataaaacagtcccaaagcttcaccaacatctactgagcaaaccggggaaaaccacattgtttttgcgcgtatgaatcgcccct |
39533471 |
T |
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| Q |
218 |
cttcgttacggatacacatgcctatacccaacttgttctcggccattgagaaggaagcgtcgacattgcacttgagccttccacgccgcggtt |
310 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39533470 |
cttcgttacggatacacatacctatacccaacttgttctcggccattgagaaggaagcgtcgacaatgcacttgagccttccacgccgcggtt |
39533378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 18748572 - 18748279
Alignment:
| Q |
17 |
aaatgtttccaaactcagtgatatctctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctc |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | || |
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| T |
18748572 |
aaatgtttccaaactcagtgttatctctgttgcttcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagttc |
18748473 |
T |
|
| Q |
117 |
atgaatccatcgaatagcataaaacagtcccaaaacttcaccaacatctaccgagcaaatcggggaaaaccacattgtttttgcgcgtatgaatcgcccc |
216 |
Q |
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||||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
18748472 |
atgaacccattgaatagcataaaacagtcccaaagcttccccaacatctaccgagcaaaccgggaaaaaccacattgtttttgcgcgtataaatcgtccc |
18748373 |
T |
|
| Q |
217 |
tcttcgttacggatacacatgcctatacccaacttgttctcggccattgagaaggaagcgtcgacattgcacttgagccttccacgccgcggtt |
310 |
Q |
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|
|||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18748372 |
tcttcgttacggatacacatacctatatccaacttgttctcggtcattgagaaggacgcgtcgacattgcacttgagccttccacgccgcggtt |
18748279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 29704619 - 29704434
Alignment:
| Q |
18 |
aatgtttccaaactca-gtgatatctctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29704619 |
aatgtttccaaactcaagtgatatctctattgattcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagctc |
29704520 |
T |
|
| Q |
117 |
atgaatccatcgaatagcataaaacagtcccaaaacttcaccaacatctaccgagcaaatcggggaaaaccacattgtttttgcgc |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||| | |||||||||||||||||||||| |
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| T |
29704519 |
atgaacccatcgaatagcataaaacagtcgcaaagcttcaccaacatctatcgaacaaatctgagaaaaccacattgtttttgcgc |
29704434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41162637 - 41162674
Alignment:
| Q |
18 |
aatgtttccaaactcagtgatatctctgttgcttcggt |
55 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||| |
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| T |
41162637 |
aatgtttccaaactcaatgatatctctattgcttcggt |
41162674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41162685 - 41162722
Alignment:
| Q |
18 |
aatgtttccaaactcagtgatatctctgttgcttcggt |
55 |
Q |
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|||||||||||||||| |||||||||| |||||||||| |
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| T |
41162685 |
aatgtttccaaactcaatgatatctctattgcttcggt |
41162722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 52467991 - 52468067
Alignment:
| Q |
18 |
aatgtttccaaactcagtgatatctctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaat |
94 |
Q |
| |
|
|||| ||||||||||| | |||||| ||||||||||| |||||| |||||||| |||||||| |||||||||| |
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| T |
52467991 |
aatgattccaaactcaataatatcttcattgcttcggttgaaataatctgctacacgcttcgaatctacctcaaaat |
52468067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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