View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15368_low_1 (Length: 643)

Name: NF15368_low_1
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15368_low_1
NF15368_low_1
[»] chr1 (7 HSPs)
chr1 (18-314)||(17032542-17032838)
chr1 (323-570)||(17032864-17033111)
chr1 (410-551)||(42373613-42373752)
chr1 (343-459)||(31586220-31586332)
chr1 (328-388)||(24685096-24685155)
chr1 (323-434)||(41919892-41919999)
chr1 (497-565)||(50589816-50589884)
[»] chr5 (3 HSPs)
chr5 (19-198)||(3713928-3714111)
chr5 (329-569)||(39184656-39184891)
chr5 (351-566)||(8730301-8730509)
[»] chr2 (4 HSPs)
chr2 (368-565)||(22885900-22886094)
chr2 (351-566)||(25505398-25505606)
chr2 (329-398)||(31902961-31903029)
chr2 (353-424)||(27739189-27739258)
[»] chr4 (7 HSPs)
chr4 (425-544)||(46699364-46699483)
chr4 (471-539)||(12295569-12295637)
chr4 (343-434)||(30963893-30963980)
chr4 (348-389)||(4305073-4305113)
chr4 (352-389)||(7702937-7702973)
chr4 (328-444)||(16501187-16501300)
chr4 (439-520)||(38929237-38929318)
[»] chr8 (4 HSPs)
chr8 (343-479)||(9519071-9519203)
chr8 (328-395)||(34866637-34866703)
chr8 (323-434)||(34389557-34389664)
chr8 (350-398)||(10551765-10551812)
[»] chr7 (2 HSPs)
chr7 (328-398)||(38305675-38305744)
chr7 (354-398)||(47326447-47326490)
[»] chr6 (1 HSPs)
chr6 (328-434)||(16510832-16510934)
[»] chr3 (3 HSPs)
chr3 (368-533)||(25595054-25595215)
chr3 (343-566)||(5555997-5556217)
chr3 (343-393)||(1653498-1653547)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 17032542 - 17032838
Alignment:
Q  18 ctagccttgctttgttgtccctaaaatctcttgtccacacctcccacatcacattaggatccatatgttgctactttcataatacaatggcgcaatacta 117  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17032542 ctagccttgctttgctgtccccaaaatctcttgtccacacctcccacatcacattaggaaccatatgttgctactttcataatacaatggcgcaatacta 17032641  T
Q  118 ttgggttaaatgttctccacctatcttgatttatgtaatgtaagggtaagaaaacgggatatgaggaacaaccacctgtctctattgcgttcggaactgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17032642 ttgggttaaatgttctccacctatcttgatttatgtaatgtaagggcaagaaaacgggatatgaggaacaaccacctgtctctattgcgttcggaactgg 17032741  T
Q  218 ttttggttgtgttgttgctgagatcggcgtcgattcagccatttttgcaggttcatggatttggtttttgtttactccgacgacggaagtctcctcc 314  Q
    |||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17032742 ttttggttgtgttgttgctgagattggcgtcgattcagtcagttttgcaggttcatggacttggtttttgtttactccgacgacggaagtctcctcc 17032838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 323 - 570
Target Start/End: Original strand, 17032864 - 17033111
Alignment:
Q  323 gatcagggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgt 422  Q
    ||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17032864 gatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattatgttgctgcttgt 17032963  T
Q  423 tttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtgg 522  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17032964 tttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattcaacgtggctgcttcttcggaatgctatggcgatgtgg 17033063  T
Q  523 ctgctttccttagagaccttcaactttgttgtcttgttcttgttggtc 570  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  17033064 ctgctttccttagagaccttcaactttgttgtcttgttcttgctggtc 17033111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 42373613 - 42373752
Alignment:
Q  410 tgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgc 509  Q
    |||| |||| |||||||||||||||  |||||| | | |||||||| |||| ||||  || || |||||| ||||||  |||| ||||||||||||||||    
T  42373613 tgttactgcctgttttcttggtgaggtggtttgacggcgtagtttt-gtctctatctttggtt-gtgggtatattcactgtggctgcttcttcggaatgc 42373710  T
Q  510 tatggcgatgtggctgctttccttagagaccttcaactttgt 551  Q
    ||||||||||| |||| ||||||| |||||||||||||||||    
T  42373711 tatggcgatgttgctgatttccttggagaccttcaactttgt 42373752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 343 - 459
Target Start/End: Complemental strand, 31586332 - 31586220
Alignment:
Q  343 ttcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttg 442  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| ||| ||||  |  ||||||||| |||||||| |||||||  || |||    
T  31586332 ttcagaccggcgtcgctgcccgtgtttt-gttgttgggtttcgtctttctctggatttgtgtca--gtgttgctg-ttgttttcatggtgaggtgggttg 31586237  T
Q  443 gcagtgtagtttttgtc 459  Q
    || ||||||||| ||||    
T  31586236 gcggtgtagtttctgtc 31586220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 24685155 - 24685096
Alignment:
Q  328 gggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtct 388  Q
    |||||||| ||||| |||| ||||||||||||||| ||| ||||||||||| |||| ||||    
T  24685155 gggttgtggttctgcttcaaaccggcgtcgctgcccgtg-ttttgttgttgaattttgtct 24685096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 41919892 - 41919999
Alignment:
Q  323 gatcagggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgt 422  Q
    |||| |||||||| ||| | |||| ||| |||||| |||| ||||||| ||||| ||||||| ||||||||||||| | ||   |||||||| ||||||     
T  41919892 gatctgggttgtggttccgcttcaaaccagcgtcgttgcccgtgtttt-gttgtgggatttcatcttcctctagatttatg--tttgtgttgttgcttg- 41919987  T
Q  423 tttcttggtgag 434  Q
    ||||||||||||    
T  41919988 tttcttggtgag 41919999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 565
Target Start/End: Complemental strand, 50589884 - 50589816
Alignment:
Q  497 ttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgt 565  Q
    ||||||| |||||||| | ||||| ||||||||||||  ||||  ||||| ||||||||||| ||||||    
T  50589884 ttcttcgaaatgctatagtgatgttgctgctttccttgaagactatcaaccttgttgtcttgctcttgt 50589816  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 3714111 - 3713928
Alignment:
Q  19 tagccttgctttgttgtccctaaaatctcttgtccacacctcccac----atcacattaggatccatatgttgctactttcataatacaatggcgcaata 114  Q
    ||||| |||| | ||||||| |||||||||||||| ||||||||||    |||||||| ||| |||| |||||||| |||||||| ||||||||||||||    
T  3714111 tagccatgctctattgtccccaaaatctcttgtccccacctcccacccacatcacatttggacccatctgttgctattttcataagacaatggcgcaata 3714012  T
Q  115 ctattgggttaaatgttctccacctatcttgatttatgtaatgtaagggtaagaaaacgggatatgaggaacaaccacctgtct 198  Q
    || ||||||||||||||||| ||||||||| | ||||||||| |||||| ||||||| | |||||||| ||||||||| |||||    
T  3714011 ctgttgggttaaatgttctctacctatcttaaattatgtaatctaagggcaagaaaatgagatatgagaaacaaccacttgtct 3713928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 329 - 569
Target Start/End: Complemental strand, 39184891 - 39184656
Alignment:
Q  329 ggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttctt 428  Q
    ||||||||||||| |||| || ||||||| ||||| |||||| || ||||  |||||||||||| || ||||||    |||||||||||  |||||||||    
T  39184891 ggttgtgattctgcttcaaactggcgtcgttgcctatgtttt-gtagttgtgtttcgtcttcctatatatatgtt---ttgtgttgctgtctgttttctt 39184796  T
Q  429 ggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctt 528  Q
    |||||| ||||||||| | |||||||| | || ||||| ||  |||||||| |||||  ||||| ||||||||||||||||||||||| |||||| ||||    
T  39184795 ggtgaggcggtttggcggcgtagttttgg-ctctatcgttggcttgtgggtatattcttcgtggctgcttcttcggaatgctatggcgttgtggccgctt 39184697  T
Q  529 tccttagagaccttcaactttgttgtcttgttcttgttggt 569  Q
    |||||  || | ||||||||||||||||||||  |||||||    
T  39184696 tccttgaagtctttcaactttgttgtcttgttggtgttggt 39184656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 351 - 566
Target Start/End: Original strand, 8730301 - 8730509
Alignment:
Q  351 ggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgta 450  Q
    |||||||||||| ||||||| |||||| |  ||||||||||||| ||| | |    || ||||||||| ||||||| || |||||| |||||||||||||    
T  8730301 ggcgtcgctgcccgtgtttt-gttgtttggcttcgtcttcctctggatctat----ttttgttgctgcctgttttcatg-tgagacagtttggcagtgta 8730394  T
Q  451 gtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttg 550  Q
    ||| | |||| ||||| || || |||||| |||| |  |||| ||| ||||   |||||||||||||||| | ||||| |||| ||||| ||||||||||    
T  8730395 gttct-gtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggagactttcaactttg 8730493  T
Q  551 ttgtcttgttcttgtt 566  Q
    |||||||| |||||||    
T  8730494 ttgtcttgctcttgtt 8730509  T

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Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 368 - 565
Target Start/End: Complemental strand, 22886094 - 22885900
Alignment:
Q  368 ttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgc 467  Q
    |||||||||||| |||| ||||||||| ||||||| |   ||||||||||||||||| |||||||||  |||||||| | || |||| | ||| |||| |    
T  22886094 ttttgttgttgggtttcatcttcctcttgatatgtaac--tgtgttgctgcttgttt-cttggtgaggtggtttggcggcgtggtttctatctctatcac 22885998  T
Q  468 tgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttgttgtcttgttcttgt 565  Q
    |  ||||||||| |||||   |||| |||||||||| ||||||| ||||||||  ||||||||||||||||| |||||  ||||||||||| ||||||    
T  22885997 tagtttgtgggtatattcgttgtggctgcttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttgctcttgt 22885900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 351 - 566
Target Start/End: Complemental strand, 25505606 - 25505398
Alignment:
Q  351 ggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgta 450  Q
    |||||||||||| ||||||| |||||| |  ||||||||||||| ||| | |    || ||||||||| ||||||| || |||||| |||||||||||||    
T  25505606 ggcgtcgctgcccgtgtttt-gttgtttggcttcgtcttcctctggatctat----ttttgttgctgcctgttttcatg-tgagacagtttggcagtgta 25505513  T
Q  451 gtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagaccttcaactttg 550  Q
    ||| | |||| ||||| || || |||||| |||| |  |||| ||| ||||   |||||||||||||||| | ||||| |||| ||||| ||||||||||    
T  25505512 gttct-gtctctatcgttggttggtgggtatatttattgtggttgcctctttataatgctatggcgatgttgttgcttaccttggagactttcaactttg 25505414  T
Q  551 ttgtcttgttcttgtt 566  Q
    |||||||| |||||||    
T  25505413 ttgtcttgctcttgtt 25505398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 31903029 - 31902961
Alignment:
Q  329 ggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagat 398  Q
    ||||||| ||| | |||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  31903029 ggttgtgtttccgcttcaaaccggcgtcgctgcccgtgtttt-gttgttgggtttcgtcttcctctagat 31902961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 27739189 - 27739258
Alignment:
Q  353 cgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttt 424  Q
    |||||||||||||| |||||||||| | |||| ||||||||| ||| |||||| |||||| |||||||||||    
T  27739189 cgtcgctgcctgtg-ttttgttgtttggtttcatcttcctcttgatttgtgat-ttgtgtggctgcttgttt 27739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 544
Target Start/End: Complemental strand, 46699483 - 46699364
Alignment:
Q  425 tcttggtgagacggtttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggct 524  Q
    ||||||||||  |||||||| | ||||||| | |||||||||||| |||||||||  ||||| | ||| ||||||||||||||| ||||| ||||| |||    
T  46699483 tcttggtgaggtggtttggcggcgtagtttatatctttatcgctggtttgtgggtaaattcaccatggctgcttcttcggaatgttatggtgatgttgct 46699384  T
Q  525 gctttccttagagaccttca 544  Q
    ||||||||| ||||| ||||    
T  46699383 gctttccttcgagactttca 46699364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 539
Target Start/End: Original strand, 12295569 - 12295637
Alignment:
Q  471 tttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttccttagagac 539  Q
    ||||||||| |||||| ||||| ||||||||| ||||||||||| |||||  ||||||| ||| |||||    
T  12295569 tttgtgggtatattcaccgtggctgcttcttcagaatgctatggtgatgttactgcttttcttggagac 12295637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 30963893 - 30963980
Alignment:
Q  343 ttcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgag 434  Q
    |||| |||||||||| |||| ||||||| || |||||||||||||||||||||||| | ||   |||||||| |||||| ||||||||||||    
T  30963893 ttcaaaccggcgtcgatgcccgtgtttt-gtggttggatttcgtcttcctctagatttatg--tttgtgttgttgcttg-tttcttggtgag 30963980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 4305073 - 4305113
Alignment:
Q  348 accggcgtcgctgcctgtgtttttgttgttggatttcgtctt 389  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  4305073 accggcgtcgctgcccgtgtttt-gttgttggatttcgtctt 4305113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 7702937 - 7702973
Alignment:
Q  352 gcgtcgctgcctgtgtttttgttgttggatttcgtctt 389  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7702937 gcgtcgctgcctgtgtttt-gttgttggatttcgtctt 7702973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 444
Target Start/End: Original strand, 16501187 - 16501300
Alignment:
Q  328 gggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttct 427  Q
    ||||||||||||   |||| |||||||||||||||  |||| | |||||||| ||| ||||||||||| || |||| |  ||||| || |  ||||||||    
T  16501187 gggttgtgattccacttcaaaccggcgtcgctgcccatgttgt-gttgttggttttagtcttcctctaaatttgtgtt--tgtgtggccgtctgttttct 16501283  T
Q  428 tggtgagacggtttggc 444  Q
    ||||||| |||||||||    
T  16501284 tggtgaggcggtttggc 16501300  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 520
Target Start/End: Original strand, 38929237 - 38929318
Alignment:
Q  439 tttggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgt 520  Q
    |||| ||||||||| ||||||| | ||| || |||||||||| || |  ||||| || |||||||||||||||||| |||||    
T  38929237 tttgacagtgtagtctttgtctctttcgatggtttgtgggttaatactccgtggttgtttcttcggaatgctatggtgatgt 38929318  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 343 - 479
Target Start/End: Original strand, 9519071 - 9519203
Alignment:
Q  343 ttcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttg 442  Q
    |||| ||| ||||||||||| ||||||| |||||||| ||||||||| |||||||| |||| |  ||| |||||| |||||||| |||||||  || |||    
T  9519071 ttcaaaccagcgtcgctgcccgtgtttt-gttgttgggtttcgtctttctctagatttgtgtt--tgtattgctg-ttgttttcatggtgaggtgggttg 9519166  T
Q  443 gcagtgtagtttttgtctttatcgctgatttgtgggt 479  Q
    || ||||||||||||||  |||||||| |||||||||    
T  9519167 gcggtgtagtttttgtccctatcgctggtttgtgggt 9519203  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 34866703 - 34866637
Alignment:
Q  328 gggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctcta 395  Q
    |||||||| ||| | |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  34866703 gggttgtggttccgcttcaaaccggcgtcgctgcccgtgtttt-gttgttggatttcgtcttcctcta 34866637  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 34389664 - 34389557
Alignment:
Q  323 gatcagggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgt 422  Q
    |||| |||||||| ||| | |||| ||||||||||||||| ||| ||||||||| | |||||||| |||||||||| | ||   |||||||| ||||||     
T  34389664 gatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtg-ttttgttgtggaatttcgtcctcctctagatttatg--tttgtgttgttgcttg- 34389569  T
Q  423 tttcttggtgag 434  Q
    ||||||||||||    
T  34389568 tttcttggtgag 34389557  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 10551765 - 10551812
Alignment:
Q  350 cggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagat 398  Q
    ||||||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  10551765 cggcgtcgctgcccgtgcttt-gttgttgggtttcgtcttcctctagat 10551812  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 38305675 - 38305744
Alignment:
Q  328 gggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagat 398  Q
    |||||||| ||| | |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  38305675 gggttgtggttccgcttcaaaccggcgttgctgcctgtgtttt-gttgttggatttcgtcttcctctagat 38305744  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 47326490 - 47326447
Alignment:
Q  354 gtcgctgcctgtgtttttgttgttggatttcgtcttcctctagat 398  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||    
T  47326490 gtcgctgcccgtgtttt-gttgttggatttcctcttcctctagat 47326447  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 434
Target Start/End: Complemental strand, 16510934 - 16510832
Alignment:
Q  328 gggttgtgattctgattcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttct 427  Q
    |||||||| ||||| |||| |||||| |||||||| ||||||| |||||||||| |||||||||||||||| | ||   |||||||| |||||| |||||    
T  16510934 gggttgtggttctgcttcaaaccggcatcgctgcccgtgtttt-gttgttggatgtcgtcttcctctagatttatg--tttgtgttgttgcttg-tttct 16510839  T
Q  428 tggtgag 434  Q
    |||||||    
T  16510838 tggtgag 16510832  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 533
Target Start/End: Complemental strand, 25595215 - 25595054
Alignment:
Q  368 ttttgttgttggatttcgtcttcctctagatatgtgatattgtgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctttatcgc 467  Q
    ||||||||||   ||||||| |||||||||| |||  | |||||||||||||||||| ||||||||| ||||||||||  |||| ||| |||| ||||||    
T  25595215 ttttgttgttatgtttcgtcatcctctagatttgt--ttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtag-tttcgtctctatcgc 25595120  T
Q  468 tgatttgtgggtttattcaacgtgggtgcttcttcggaatgctatggcgatgtggctgctttcctt 533  Q
    |  ||| ||||| | || | ||||| ||| | || |||| || |||||||||| ||||||||||||    
T  25595119 tcgtttatgggtattttaaccgtggctgcatttttggaaggcaatggcgatgttgctgctttcctt 25595054  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 566
Target Start/End: Original strand, 5555997 - 5556217
Alignment:
Q  343 ttcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctc-tagatatgtgatattgtgttgctgcttgttttcttggtgagacggttt 441  Q
    |||| ||||||||||||||| ||||| || |||||||  |||||||||    |||||||||| |  ||||||||||||||||||| ||||| | |||||     
T  5555997 ttcagaccggcgtcgctgcccgtgttctt-ttgttgggcttcgtcttcaaaatagatatgtgtt--tgtgttgctgcttgttttcatggtgtggcggtta 5556093  T
Q  442 ggcagtgtagtttttgtctttatcgctgatttgtgggtttattcaacgtgggtgcttcttcggaat-gctatggcgatgtggctgctttccttagagacc 540  Q
    ||| |  | | |||||||| | |||||| ||||||||| ||||||   ||| ||||||||||||||  |||| | ||||| |||||||||||||||| |     
T  5556094 ggctgcattg-ttttgtctctgtcgctggtttgtgggtatattcactatggttgcttcttcggaatccctat-gtgatgttgctgctttccttagagtct 5556191  T
Q  541 ttcaactttgttgtcttgttcttgtt 566  Q
    | |  ||||||||||||  |||||||    
T  5556192 tccgcctttgttgtctttctcttgtt 5556217  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 1653547 - 1653498
Alignment:
Q  343 ttcacaccggcgtcgctgcctgtgtttttgttgttggatttcgtcttcctc 393  Q
    |||| |||||||||| |||| ||||||| ||||||||||||||||||||||    
T  1653547 ttcaaaccggcgtcgatgcccgtgtttt-gttgttggatttcgtcttcctc 1653498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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