View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15368_low_10 (Length: 418)
Name: NF15368_low_10
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 34786724 - 34787128
Alignment:
| Q |
20 |
ttgaaccagaatacttcactataaaacgtttctcagaagaaaaccggaaggcgttgcacgagtttttcggataacaacctaaagtctttgttgaaaagga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34786724 |
ttgaaccagaatacttcactataaaacgtttctcagaagaaaaccggaaggcgttgcacgagtttttcggataacaacctaaagtctttgttgaaaagga |
34786823 |
T |
|
| Q |
120 |
ttccgggaacaagattccataacatgattcaatcaaggattcaattaaggattctggtaacccactaaccaagaaaacctaacc-------aacctcaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34786824 |
ttccgggaacaagattccataacatgattcaatcaaggattcaattaaggattctggtaacccactaaccaagaaaacctaaccaacctcaaacctcaat |
34786923 |
T |
|
| Q |
213 |
caatgacttgagtaaacaattaaaacacaaacacgtgaaaatattaagagaaataacacaaaaactattaagagaacaccgagaatttgttgaaagctga |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34786924 |
caatgatttgagtaaacaattaaaacacaaacacgtgaaaatattaagagaaataacacaaaaactattaagagaacaccgagaatttgttgaaagctga |
34787023 |
T |
|
| Q |
313 |
agtgcgaattgnnnnnnnnnccagaaagaggggtgaatgccacttgnnnnnnnnnnctccataaaaggtggggtgaaaagtgaaagggaattgtgttttg |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34787024 |
agtgcgaattg-ttttttttccagaaagaggggtgaatgccacttgttttttttttctccataaaaggtggggtgaaaagtgaaagggaattgtgttttg |
34787122 |
T |
|
| Q |
413 |
ttttat |
418 |
Q |
| |
|
|||||| |
|
|
| T |
34787123 |
ttttat |
34787128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 24128201 - 24128153
Alignment:
| Q |
243 |
acacgtgaaaatattaagagaaataacacaaaaactattaagagaacac |
291 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
24128201 |
acacatgaaaatattaagaggaataacacaaaaacgattaagagaacac |
24128153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 24128068 - 24128019
Alignment:
| Q |
370 |
tccataaaaggtggg-gtgaaaagtgaaagggaattgtgttttgttttat |
418 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
24128068 |
tccataaaaggttggagtgaaaagtgaaaggggattgtgttttgttttat |
24128019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 24128340 - 24128285
Alignment:
| Q |
61 |
aaccggaaggcgttgcacgagtttttcggataacaacctaaagtctttgttgaaaa |
116 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||| ||| ||||| |||||| |
|
|
| T |
24128340 |
aaccggaaggcattgcacgagttttccggataacaaccggaaggctttggtgaaaa |
24128285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University