View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_13 (Length: 374)
Name: NF15368_low_13
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 31297517 - 31297371
Alignment:
| Q |
3 |
tgcttatgattgatatttttgtttttatttgtatcattataataagtgaagaatatttgaaaaacttaacaaaagtccaccaaaactttcgaagaaaaga |
102 |
Q |
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| T |
31297517 |
tgcttatgattgatatttttgtttttatttatatcattataataagtgaagaatatttgaaaaacttaaacaaagtccaccaaaactttcgaagaaaaga |
31297418 |
T |
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| Q |
103 |
ttagtatattaatcttctttattagttaacatgatatgttagtttct |
149 |
Q |
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| T |
31297417 |
ttagtatattaatcatctttattagttcacatgatatgttagtttct |
31297371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 31294266 - 31294343
Alignment:
| Q |
210 |
atattcatgatatagaaatctctttgattgtttgaaagttcatgatacaaaaaattctccaaatgatgcagaaaattt |
287 |
Q |
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| T |
31294266 |
atattcatggtataaaaaggtctttgattatatgaaagttcttgatacaaagaattctcccaatgatgcagaaaattt |
31294343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 1193519 - 1193664
Alignment:
| Q |
3 |
tgcttatgattgatatttttgtttttatttgtatcattataataagtgaagaatatttgaaaaacttaacaaaagtccaccaaaactttcgaagaaaaga |
102 |
Q |
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| T |
1193519 |
tgcttatgattgatatttttgtttttatttgtatcattataataaatgaagaatatttgaaaaatttaacaaa-gtccaccaaaactttcgaagaaaaga |
1193617 |
T |
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| Q |
103 |
ttagtatattaatcttctttattagttaacatgatatgttagtttct |
149 |
Q |
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| T |
1193618 |
ttagtatattaatcttctttattagttcacatgatatgttagtttct |
1193664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 37119988 - 37119848
Alignment:
| Q |
12 |
ttgatatttttgtttttatttgtatcattataataagtgaagaat-atttgaaaaacttaacaaaagtccaccaaa----actttcgaagaaaagattag |
106 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| | |||| || ||| |||||| |
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| T |
37119988 |
ttgatatttttgtttttgtttgtatcattattataagtgaagaatgatttgaaaaacttaacaaa-gtccaccaaacaaaaatttcaaa-aaaggattag |
37119891 |
T |
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| Q |
107 |
tatattaatcttctttattagttaacatgatatgttagtttct |
149 |
Q |
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| T |
37119890 |
tatattaattttttttattagttcatatgatatgttagtttct |
37119848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 37127465 - 37127343
Alignment:
| Q |
13 |
tgatatttttgtttttatttgtatcattataataagtgaagaat-atttgaaaaacttaacaaaagtccaccaaaactttcgaagaaaagattagtatat |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| || |||| || ||| ||||| ||||| |
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| T |
37127465 |
tgatatttttgtttttgtttgtatcattataataagtgaataatgatttgaaaaacttaac-aaagtccaccataagtttc-aaaaaaggattaatatat |
37127368 |
T |
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| Q |
112 |
taatcttctttattagttaacatgat |
137 |
Q |
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|||| || |||||||||| ||||||| |
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| T |
37127367 |
taat-ttttttattagttcacatgat |
37127343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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