View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_14 (Length: 326)
Name: NF15368_low_14
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 30074497 - 30074188
Alignment:
| Q |
1 |
tgtctattttttctgtcaggcttgctatttgaagctccctggaacttgatgaattttgttcatcagaatggccggatgagcatgaatcatgaaattgtag |
100 |
Q |
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| T |
30074497 |
tgtctattttttctgtcaggcttgctatttgaagctccctggaacttgatgaattttgttcatcagaatggccggatgagcatgaatcatgaaattctag |
30074398 |
T |
|
| Q |
101 |
atcaacagcacttggtccagcagcttcacttctacatttggttgagccatcatcgtcatgtgaggaactttcattcccaatctccttgaatttttcaatt |
200 |
Q |
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| T |
30074397 |
atcaacagcacttggtccagcagcttcacttctacatttgattgagccattatcatcatgtgaggaactttcattcccaatctccttgaatttttcaatt |
30074298 |
T |
|
| Q |
201 |
tctgcaagagacgcatattggttatgaagagttcacagaatgcaatgacacacaccacacttccaataaagacactattgcagaggccaaaaacttcttt |
300 |
Q |
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| T |
30074297 |
tctgcaagagacgcatattggttatgaagagttcacagaatgcaatgacacacaccacacttccaataaagacactattgcagaggccaaaaacttcttt |
30074198 |
T |
|
| Q |
301 |
taactttcat |
310 |
Q |
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|||||||||| |
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| T |
30074197 |
taactttcat |
30074188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 21465639 - 21465572
Alignment:
| Q |
83 |
tgaatcatgaaattgtagatcaacagcacttggtccagcagcttcacttctacatttggttgagccat |
150 |
Q |
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| T |
21465639 |
tgaatcatggaattctagatcaacaacacttggtccagcagcttcacttctacatttggttgagccat |
21465572 |
T |
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