View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15368_low_15 (Length: 319)

Name: NF15368_low_15
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15368_low_15
NF15368_low_15
[»] chr4 (1 HSPs)
chr4 (13-302)||(30382185-30382472)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 30382472 - 30382185
Alignment:
Q  13 aatatgtggagttttgagatgcaacatttatagtattaatttgttgtaagtcttaaaaaattcactcctatcaaagttttaatttgatgtgcattgtgtg 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30382472 aatacgtggagttttgagatgcaacatttatagtattaatttgttgtaagtcttaaaaaattcactcctatcaaagttttaatttgatgtgcattgtgtg 30382373  T
Q  113 taaattttgcttatctctaggtaccgatcattcctattattttgctgacatgtttaacaacattgattcaccgattaatattttgtctttgattgcatca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  30382372 taaattttgcttatctctaggtaccgatcattcctattattttgctgacatgtttaacaacattgattcaccgattaata--ttgtctttgattgcatca 30382275  T
Q  213 cggtaagttagtaggatcagcaattcatccaaatcataaaataagtccaagctcagtgatttcatttaagacaaaatggtgttaggcttg 302  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30382274 cggtaagttagtagtatcagcaattcatccaaatcataaaataagtccaagctcagtgatttcatttaagacaaaatggtgttaggcttg 30382185  T

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