View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15368_low_18 (Length: 270)

Name: NF15368_low_18
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15368_low_18
NF15368_low_18
[»] chr5 (9 HSPs)
chr5 (17-263)||(10873061-10873318)
chr5 (17-263)||(10878132-10878389)
chr5 (17-263)||(10883203-10883460)
chr5 (114-263)||(10887118-10887267)
chr5 (114-263)||(10867102-10867251)
chr5 (114-263)||(39676645-39676794)
chr5 (114-263)||(10046747-10046896)
chr5 (17-57)||(10866987-10867027)
chr5 (200-265)||(37949453-37949518)
[»] chr8 (1 HSPs)
chr8 (203-263)||(30708477-30708537)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 10873318 - 10873061
Alignment:
Q  17 acactttcaacaagtaagtaattttaaactttgaactttctcctatatgttttacttttatttttgttgaaattactcatttggct----gattgatt-- 110  Q
    ||||||||||||||||||||||||| || |||||||||||| ||    |||| ||| | | ||||||||||||||||||||||| |    ||||||||      
T  10873318 acactttcaacaagtaagtaattttcaattttgaactttcttct----gtttcactataaattttgttgaaattactcatttggataagtgattgatttt 10873223  T
Q  111 ---------atgtatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaac 201  Q
             || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  10873222 ctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggttcacttgttcaac 10873123  T
Q  202 gggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10873122 gggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10873061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 10878389 - 10878132
Alignment:
Q  17 acactttcaacaagtaagtaattttaaactttgaactttctcctatatgttttacttttatttttgttgaaattactcatttggct----gattgatt-- 110  Q
    ||||||||||||||||||||||||| || |||||||||||| ||    |||| ||| | | ||||||||||||||||||||||| |    ||||||||      
T  10878389 acactttcaacaagtaagtaattttcaattttgaactttcttct----gtttcactataaattttgttgaaattactcatttggataagtgattgatttt 10878294  T
Q  111 ---------atgtatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaac 201  Q
             || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  10878293 ctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggttcacttgttcaac 10878194  T
Q  202 gggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10878193 gggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10878132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 10883460 - 10883203
Alignment:
Q  17 acactttcaacaagtaagtaattttaaactttgaactttctcctatatgttttacttttatttttgttgaaattactcatttggct----gattgatt-- 110  Q
    ||||||||||||||||||||||||| || |||||||||||| ||    |||| ||| | | ||||||||||||||||||||||| |    ||||||||      
T  10883460 acactttcaacaagtaagtaattttcaattttgaactttcttct----gtttcactataaattttgttgaaattactcatttggataagtgattgatttt 10883365  T
Q  111 ---------atgtatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaac 201  Q
             || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  10883364 ctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggttcacttgttcaac 10883265  T
Q  202 gggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10883264 gggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10883203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 114 - 263
Target Start/End: Complemental strand, 10887267 - 10887118
Alignment:
Q  114 tatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaacgggtgatgcaat 213  Q
    |||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  10887267 tatttaggtcaagtagatttgcaagattacagagtattaaagctactatggcaggaaagaatttatacactagattcacttgttcaacgggtgatgcaat 10887168  T
Q  214 ggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10887167 ggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10887118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 263
Target Start/End: Original strand, 10867102 - 10867251
Alignment:
Q  114 tatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaacgggtgatgcaat 213  Q
    |||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  10867102 tatttaggtcaagtagatttgcaagattacagagtattaaagctactatggcaggaaagaatttgtacactagattcacttgttcaacgggtgatgcaat 10867201  T
Q  214 ggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10867202 ggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttc 10867251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 263
Target Start/End: Original strand, 39676645 - 39676794
Alignment:
Q  114 tatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaacgggtgatgcaat 213  Q
    |||||||||||||||||||||||||| | || | |||||||||||| || || ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  39676645 tatttaggtcaagtagatttgcaagattacaaaatattaaagctactatagcaggaaagaatttatacactagattcacttgttcaaccggtgatgcaat 39676744  T
Q  214 ggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39676745 ggggatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttc 39676794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 114 - 263
Target Start/End: Original strand, 10046747 - 10046896
Alignment:
Q  114 tatttaggtcaagtagatttgcaagactgcagagtattaaagctacaatggctggaaagaatttatacaccagattcacttgttcaacgggtgatgcaat 213  Q
    |||| ||||||||||||||||| ||| | |||| ||||||||| |||||||| ||||||||||||||||  ||||| || |||||||| |||||||||||    
T  10046747 tattcaggtcaagtagatttgcgagattacagaatattaaagcaacaatggcaggaaagaatttatacattagatttacatgttcaaccggtgatgcaat 10046846  T
Q  214 ggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10046847 gggaatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttc 10046896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 10866987 - 10867027
Alignment:
Q  17 acactttcaacaagtaagtaattttaaactttgaactttct 57  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  10866987 acactttcaacaagtaagtaattttcaattttgaactttct 10867027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 37949453 - 37949518
Alignment:
Q  200 acgggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttcga 265  Q
    ||||||||||| ||||||||||||||||| || ||||| || || ||||| |||||| | ||||||    
T  37949453 acgggtgatgccatggggatgaacatggtctccaaaggggtgcagaacgttcttgatttccttcga 37949518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 30708537 - 30708477
Alignment:
Q  203 ggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgatattcttc 263  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||| || |||||| ||||||    
T  30708537 ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttc 30708477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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