View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_2 (Length: 577)
Name: NF15368_low_2
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 32032805 - 32032384
Alignment:
| Q |
14 |
gaacctgtgtacgggcgagaaaccagtatacaaaaaagatgaaaaatgaacatctctaaagaataattagggttcataactggtgtatggatcgaccacc |
113 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32032805 |
gaacccgtgtacgggcgagaaaccaggatacaaaaaagatgaaaaatgaacatctctaaagaataattagggttcataactggtgtatggatcgaccacc |
32032706 |
T |
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| Q |
114 |
aataaggaatcaagatccactaac-aacaactctctgaaccaaccagcaagtaataaagctttttcgagcctaacggtctgaaatcagtaacatgaactg |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32032705 |
aataaggaatcaagatccactaaccaacaactctctgaaccaaccagcaagtaataaagctttttcgagcctaacggtctgaaatcagtaacatgaactg |
32032606 |
T |
|
| Q |
213 |
agacagataaaaagtcggtaccaaagtagaagtagttctgacgccttgagacctgcagtttcaattagacgcgtaataaccctcatcacgggatgagtca |
312 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32032605 |
agacagataaaaagtcggtaccaaagtggaggtagttctgacgccttgagacctgcagtttcaattagacgcgtaataaccctcatcgcgggatgagtca |
32032506 |
T |
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| Q |
313 |
aatatgttagtaacatagacccctgagggttatcagaaccaaatgaagcagaccctttcgagtttatgaaaccgatcaccaaattatatgacaaatctgc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32032505 |
aatatgttagtaacatagacccctgagggttatcagaaccaaatgaagcagaccctttcgagtttatgaaaccgatcaccgaattatatgacaaatctgc |
32032406 |
T |
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| Q |
413 |
acccacccaatctttaagcaag |
434 |
Q |
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| T |
32032405 |
acccacccaatctttaagcaag |
32032384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 462 - 557
Target Start/End: Complemental strand, 32032356 - 32032261
Alignment:
| Q |
462 |
tcatagcatgagaacaacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagagagataacgac |
557 |
Q |
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| T |
32032356 |
tcatagcatgagaacaacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagagagataacgac |
32032261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 548
Target Start/End: Complemental strand, 32078824 - 32078762
Alignment:
| Q |
486 |
attgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagaga |
548 |
Q |
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| T |
32078824 |
attgcacacttcttaatttattgtacaaatattacatgtccttctccaagtagagaacagaga |
32078762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 553
Target Start/End: Complemental strand, 32065503 - 32065427
Alignment:
| Q |
477 |
aacactttcattgcacacttcataatttataatagaaatattacatctccttctccaagtggagagcagagagataa |
553 |
Q |
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| T |
32065503 |
aacactttcataacacacttcttaatttatagtacccatattacaagtccttctccacgtggagaacaaagagataa |
32065427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 10623672 - 10623607
Alignment:
| Q |
22 |
gtacgggcgagaaaccagtatacaaaaaagatgaaaaatgaacatctctaaagaataattagggtt |
87 |
Q |
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| T |
10623672 |
gtacgggcacgaaaccagattacaaaaaatatgaaaaatgaacatatgtaaagaacaattaaggtt |
10623607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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