View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15368_low_23 (Length: 243)
Name: NF15368_low_23
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 15303200 - 15303407
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
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|||||||||| | ||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15303200 |
aataagaaaggccacttaaattgaacaaccatataggcaattcagaaaagaaatcgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
15303299 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttccttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15303300 |
tggaagagacgggctcaaactttcaagtgagcaactactcaaatataactcagaaagtgaaggaagcatattcaatatctgaagccaatgtgtttccttg |
15303399 |
T |
|
| Q |
218 |
tggatatt |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
15303400 |
tggatatt |
15303407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 15483569 - 15483776
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||||||| | ||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15483569 |
aataagaaaggccacttaaattgaacaaccatataggcaattcagaaaagaaatcgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
15483668 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttccttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15483669 |
tggaagagacgggctcaaactttcaagtgagcaactactcaaatataactcagaaagtgaaggaagcatattcaatatctgaagccaatgtgtttccttg |
15483768 |
T |
|
| Q |
218 |
tggatatt |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
15483769 |
tggatatt |
15483776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 15284685 - 15284888
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15284685 |
aataagaaagaccacttagattgaacaaccatataggcaattcataaaataaatcattttcagaaagatcaagatattcaagtgaagtgaaattggcata |
15284784 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttccttg |
217 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
15284785 |
tggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttg |
15284884 |
T |
|
| Q |
218 |
tgga |
221 |
Q |
| |
|
|||| |
|
|
| T |
15284885 |
tgga |
15284888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 15465054 - 15465257
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15465054 |
aataagaaagaccacttagattgaacaaccatataggcaattcataaaataaatcattttcagaaagatcaagatattcaagtgaagtgaaattggcata |
15465153 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttccttg |
217 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
15465154 |
tggaagagacatactcacactttcaagtgagcaactactcaaatataactcggaaagtgaaggaaacatattcaatagctgaagccaatgcgtttccttg |
15465253 |
T |
|
| Q |
218 |
tgga |
221 |
Q |
| |
|
|||| |
|
|
| T |
15465254 |
tgga |
15465257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 15446948 - 15447151
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||||||| | |||||||||||| ||||| |||||||||||| |||||||| || |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
15446948 |
aataagaaaggccacttagattgaacaaccaaagaggcaattcagagaagaaattattgtaagaaagatcaagatattcaagtgaggtgaaattgacata |
15447047 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttccttg |
217 |
Q |
| |
|
|| |||||||||| || ||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
15447048 |
tgaaagagacgggtgcacactttcaagtaagcaactactcaaatgtaactcagaaagtgaaggaagcatattcaatatctgaagccaaagcgtttccttg |
15447147 |
T |
|
| Q |
218 |
tgga |
221 |
Q |
| |
|
|||| |
|
|
| T |
15447148 |
tgga |
15447151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15298439 - 15298603
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||||||||| |||| ||||||| |||| |||| | |||||||||||||| |||||||||| |||||||| |||||| ||| | ||||||||||| |
|
|
| T |
15298439 |
aataagaaagaccactttgattgaacaaccgaatagggagttcagaaaagaaatcatttccagaaacatcaagatcttcaagcgaaataaaattggcata |
15298538 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaa |
182 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15298539 |
tggaagtgacgagctcaaactttcaagtgagccactactcaaatataactctgaaagtgaaggaa |
15298603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15478808 - 15478972
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||||||||| |||| ||||||| |||| |||| | |||||||||||||| |||||||||| |||||||| |||||| ||| | ||||||||||| |
|
|
| T |
15478808 |
aataagaaagaccactttgattgaacaaccgaatagggagttcagaaaagaaatcatttccagaaacatcaagatcttcaagcgaaataaaattggcata |
15478907 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaa |
182 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15478908 |
tggaagtgacgagctcaaactttcaagtgagccactactcaaatataactctgaaagtgaaggaa |
15478972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 18052704 - 18052880
Alignment:
| Q |
31 |
acttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcatatggaagagacggg |
130 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||| || ||||||||||||||||||||||||| || |||||||||||| ||||||| || |
|
|
| T |
18052704 |
acttagattgaataaccaattaggtagttcagaaaagaaatcattgtcagaaagatcaagatattcaagtgatgtaaaattggcatattgaagagatgga |
18052803 |
T |
|
| Q |
131 |
ctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatg |
207 |
Q |
| |
|
|| ||||||| ||||||||||||||| |||||| ||||| ||||||| |||| | || || ||||||||||| |
|
|
| T |
18052804 |
ttcgcgttttcaagtaagcaactactcaaatgtaactcagaaagcgaaggaagcatagttaacatttgaagccaatg |
18052880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 15314065 - 15314261
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||| ||| | ||||| |||||| ||||| ||||||| ||||| ||||||| ||| ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15314065 |
aataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcata |
15314164 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttcc |
214 |
Q |
| |
|
| |||||||| | || ||||| |||| || ||| ||||| |||||| |||||||||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
15314165 |
tagaagagactgactagcacttttaagctgacacctatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttcc |
15314261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 15494434 - 15494630
Alignment:
| Q |
18 |
aataagaaagactacttagattgaataaccatgtaggcaattcagaaaagaaattgtttccagaaagatcaagatattcaagtgaagtgaaattggcata |
117 |
Q |
| |
|
|||||| ||| | ||||| |||||| ||||| ||||||| ||||| ||||||| ||| ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15494434 |
aataagcaaggccacttatattgaacaaccaaataggcaagtcagagaagaaatcattttgagaaagatcaagatattcaagggaagtgaagttggcata |
15494533 |
T |
|
| Q |
118 |
tggaagagacgggctcaaactttcaagcgagcaactactcaaatataactctgaaagtgaaggaaacatattcaatatctgaagccaatgtgtttcc |
214 |
Q |
| |
|
| |||||||| | || ||||| |||| || ||| ||||| |||||| |||||||||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
15494534 |
tagaagagactgactagcacttttaagctgacacctatacaaatgtaactcagaaagtgaaggaaacatagtcaatatttgaagccaacgagtttcc |
15494630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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