View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_25 (Length: 238)
Name: NF15368_low_25
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 45325861 - 45325752
Alignment:
| Q |
34 |
gaggtgctactgctagtgtatacacgaggattacgaaacagattgattgtttatttatgaacacaaagattcctccgacgatacattgaacgagtgacgc |
133 |
Q |
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| T |
45325861 |
gaggtgctactgctagtgtatacacgaggattacgaaacagattgattgtttattcatgaacacaaagattcctccgacgatacattgaacgagtgacgc |
45325762 |
T |
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| Q |
134 |
acgcagcgtt |
143 |
Q |
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| T |
45325761 |
acgcagcgtt |
45325752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 45325734 - 45325677
Alignment:
| Q |
167 |
cgcggtcttgattttgttggaagagaaggggaagcatgttgcaatccaagtaataaat |
224 |
Q |
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| T |
45325734 |
cgcggtcttgattttgttggaagagaaggggaagcatgttgcaatccaagtaataaat |
45325677 |
T |
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