View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_3 (Length: 563)
Name: NF15368_low_3
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 52176171 - 52175619
Alignment:
| Q |
1 |
gaaccgttttctcccgaacagtctgccactgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52176171 |
gaaccgttttctcccgaacagtctgccattgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatc |
52176072 |
T |
|
| Q |
101 |
gttttgtcgacgccacaagcaccataacattattacaatgtcctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52176071 |
gttttgtcgacgccacaagcaccataacattattacaatgtcctggcacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagtta |
52175972 |
T |
|
| Q |
201 |
gatacagcagcagcagcatccattattatatcccatagcccagctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcatttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52175971 |
gatacagcagcagcagcatccattattatatcccatagcccagctgcttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcatttt |
52175872 |
T |
|
| Q |
301 |
cataattagtctcgcaattgggacagctgtccgcacacgacactcccctatcttgcagccacatacttttttacataattaattagggactttgaagggg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52175871 |
cataattagtctcgcaattgggacagctgtccgcacacgacactcccctatcttgcagccacatacttttttacataattaattagggactttgaagggg |
52175772 |
T |
|
| Q |
401 |
agggggagtggcacaagcacaagagatggttatttgttgaatagagaataatttttcttgattatagcaaacttgtgaagctttgatgccattattactt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52175771 |
agggggagtggcacaagcacaagagatggttatttgttgaatagagaataatttttcttgattatagcaaacttgtgaagctttgatgccattattactt |
52175672 |
T |
|
| Q |
501 |
gtttcggggcacagtctcatttctagtattttaagtttctattttctcctatg |
553 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52175671 |
gtttcggggcgcagtctcatttctagtattttaagtttctattttctcctatg |
52175619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 25500592 - 25500231
Alignment:
| Q |
1 |
gaaccgttttctcccgaacagtctgccactgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatc |
100 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| || |||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
25500592 |
gaactgttttctcttgaacaacctgccactgcttaagaacctctcgcgctaaatacacagccatctgcacatctttcatttctccctcccacaccttatc |
25500493 |
T |
|
| Q |
101 |
gttttgtcgacgccacaagcaccataacattattacaatgtcctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagtta |
200 |
Q |
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|||| |||||||||||||||||||||| || ||| ||||||| || ||| | ||||||||||||||||||||||||| |||||| ||||||||||| ||| |
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| T |
25500492 |
gtttcgtcgacgccacaagcaccataatatcattgcaatgtcgtggcacttctgtttagaacacctgcataataactgaaaaatacattcagcaaaatta |
25500393 |
T |
|
| Q |
201 |
gatacagcagcagcagcatccattattatatcccatagcccagctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcatttt |
300 |
Q |
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|| | ||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
25500392 |
ga---aacagcaacagcttccattattatatcccatagcccagctacttgccacacttgttttgcagcctcacagccaataaacacgtgccaatcatttt |
25500296 |
T |
|
| Q |
301 |
cataattagtctcgcaattgggacagctgtccgcacacgacactcccctatcttgcagccacatac |
366 |
Q |
| |
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||||||||||||||||| || | ||||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
25500295 |
cataattagtctcgcaa-tgaggcagctatccgtacacgacactcccctatcttgcagccgcatac |
25500231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 43 - 318
Target Start/End: Original strand, 6508555 - 6508829
Alignment:
| Q |
43 |
cgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatcgttttgtcgacgccacaagcaccataacattattacaatgtc |
142 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||| || || ||| |||| |||| || || |||||| || ||||||||||| || | || || |
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| T |
6508555 |
cgcgagctaaatgcacaaccagccgcacttctttcatatcaccttcctacactttattattccttctacgccataaacaccataacatcatcgcgatatc |
6508654 |
T |
|
| Q |
143 |
ctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagttagatacagcagcagcagcatccattattatatcccatagccca |
242 |
Q |
| |
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||||| |||| | |||| |||||| |||||| |||||||||||| ||||||||||| |||||||||||||| || || || |||| || ||| |
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| T |
6508655 |
ttgacatgtttgatcggaac-cctgcacaataaccgaaaaatgcattctgcaaagttagaaacagcagcagcagcgtctcatactaattcccgcaggcca |
6508753 |
T |
|
| Q |
243 |
gctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcattttcataattagtctcgcaat |
318 |
Q |
| |
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|| |||||||| ||| || | |||||||||||||| |||| | ||| ||||||||||| || || ||||||||| |
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| T |
6508754 |
gcaacttgccacactagtttggcagcctcgcaacctataacccagtgtcaatcattttcgcaactattctcgcaat |
6508829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 38196312 - 38196388
Alignment:
| Q |
231 |
tcccatagcccagctacttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcattttcataatt |
307 |
Q |
| |
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||||||| |||||| |||||||||||||| |||| || || ||||||||||| ||||||| |||||| || ||||| |
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| T |
38196312 |
tcccataacccagcaacttgccaaacttgctttgccgcttcacaaccaataaagacgtgcctatcattctcgtaatt |
38196388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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