View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15368_low_31 (Length: 224)
Name: NF15368_low_31
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 3021979 - 3021888
Alignment:
| Q |
13 |
cataggttataaaatgaaatgaaaattgtattgaatatgagaaatgtagtttaaatcaagagattacatcacttacatatataaagatcaac |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021979 |
cataggttataaaatgaaatgaaaattgtatcgaatatgagaaatgtagtttaaatcaagagattacatcacttacatatataaagatcaac |
3021888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 3021840 - 3021785
Alignment:
| Q |
152 |
atctctttatatggtaggtggttcaagtttcatgttcaatccaacaaactatgttt |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021840 |
atctctttatatagtaggtggttcaagtttcatgttcaatccaacaaactatgttt |
3021785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University