View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_4 (Length: 549)
Name: NF15368_low_4
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 453
Target Start/End: Complemental strand, 10110076 - 10109645
Alignment:
| Q |
21 |
aatattccctacttttatttctctgcattattgagttcacttctctcattatccatatagagtgcatatactactaattttgatataaaaataataataa |
120 |
Q |
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| T |
10110076 |
aatattccctacttttatttctctgcattattgagttcacttctctcattatccatatggagtgcata--ctactaattttgatataaagataataataa |
10109979 |
T |
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| Q |
121 |
tatgtcagcataggttttttattgcattctcttagcattaaaaatactttgaaataattattatattgataaagtacaggatcagtttaagaaatatttt |
220 |
Q |
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| T |
10109978 |
tatgtcagcataggttttttattgcattctcttagcattaaaaatactttaaaataattattatattgataaagtacaggatcagtttaagaaatatttt |
10109879 |
T |
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| Q |
221 |
tctaatttcttttgtaaactttccatgtaaataattctcaacaaaaagtatattctgcatgtgctcaatcatcatgaatcacatggctaccacaagagag |
320 |
Q |
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| T |
10109878 |
tctaatttcttttgtaaactttccatgtaaataattctcaacaaaaagtatattctgcatgtgctcaatcatcatgaatcacatggctcccacaagagag |
10109779 |
T |
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| Q |
321 |
taagttaaatgattagttagctgacataaaaaatattcaatgttcaaacaacttatttaaaaaatttc-tgnnnnnnnnaataaaatagatgtgttacat |
419 |
Q |
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| T |
10109778 |
taagttaaatgattagttagctgacataaaaaatattcaatgttcaaacaacttatgcaaaaaatttctttgtttttttaataaaaaagatgtgttgtat |
10109679 |
T |
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| Q |
420 |
tttacacacattaaatcaaattacatcttgacca |
453 |
Q |
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| T |
10109678 |
tttacacacattaaatcaaattacatcttgacca |
10109645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 218 - 364
Target Start/End: Complemental strand, 10114297 - 10114150
Alignment:
| Q |
218 |
ttttctaatttcttttgtaaactttccatgtaaataattctcaacaaaaagtatattctgcatgtgctcaatcatcatgaatcacatggctaccacaaga |
317 |
Q |
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| T |
10114297 |
ttttctaatttcttttgtaaactttccatgtaaaaaattctcaacaaaaagtatattctgcatgtgctcaatcatcatgaatcacatggccaccgcaaga |
10114198 |
T |
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| Q |
318 |
gagtaagttaaatgattagttagctgacat--aaaaaatattcaatgtt |
364 |
Q |
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| T |
10114197 |
gactaagtt-aatgattagttagctaacattaaaaaaatattcaatgtt |
10114150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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