View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_5 (Length: 532)
Name: NF15368_low_5
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 39 - 522
Target Start/End: Complemental strand, 11901792 - 11901309
Alignment:
| Q |
39 |
gaggagaaggaggagaacgtaagccaagtcaaagatatagacaaaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtgg |
138 |
Q |
| |
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|||||| |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901792 |
gaggaggaggaggagaaggtaagccatgtcaaagatatagaccgaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtgg |
11901693 |
T |
|
| Q |
139 |
ggtacaatggtcacaccttgtctaactggctccattccatccaatgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaat |
238 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901692 |
ggtacaatcgtcacaccttgtctaactggctccattccatccagtgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaat |
11901593 |
T |
|
| Q |
239 |
ggatcagcttccacatctcaaggttctccaacttcggagactggactctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctact |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |
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| T |
11901592 |
ggatcagcttccacatctcaaggttctccaaattcggagactggactctctgaaattcattgcagaaaacaatcaagttggtaattccccttcctctact |
11901493 |
T |
|
| Q |
339 |
acagcaatannnnnnnnnccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagac |
438 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11901492 |
accccaatattgttttttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagac |
11901393 |
T |
|
| Q |
439 |
catatttcagttgcatttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901392 |
catatttcagttgcatttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
11901309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 84 - 522
Target Start/End: Original strand, 12039554 - 12039992
Alignment:
| Q |
84 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
183 |
Q |
| |
|
|||| |||||| ||| ||| ||||| | ||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||| || ||| | || | |
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|
| T |
12039554 |
aagtcgcttgactgtattgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcatt |
12039653 |
T |
|
| Q |
184 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |
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| T |
12039654 |
gtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttgga |
12039753 |
T |
|
| Q |
284 |
ctctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaatannnnnnnnnccatccttgaaggaacttacaatctcg |
383 |
Q |
| |
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||| ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
12039754 |
ctcactgaaattcattgcaaaaaacaatcaagttggtaatttcccttcctttactacaccaatattattttttccatccttgaaggaacttacaatctcg |
12039853 |
T |
|
| Q |
384 |
gattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatttcaaaactaaacatccaatgttgtccta |
483 |
Q |
| |
|
|||||||| ||||| || ||||||||| ||| |||||| |||| |||||||||||||| ||||||||||||||| |||||||| |||||| ||| || | |
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| T |
12039854 |
gattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgcatttccaaactaaatgtccaatattgcccca |
12039953 |
T |
|
| Q |
484 |
aattagcttgcatgcctctatatcctggtcttgatgatg |
522 |
Q |
| |
|
| |||||||||||||| ||||||||| ||||||||||| |
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|
| T |
12039954 |
agttagcttgcatgccactatatcctaatcttgatgatg |
12039992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 11828659 - 11828870
Alignment:
| Q |
89 |
gcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtctt |
188 |
Q |
| |
|
|||||||||||| |||||||||| ||| || || |||||| |||| |||||||| |||||||| ||||||||||||||| ||| | ||||| ||| |
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|
| T |
11828659 |
gcttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgcctt |
11828758 |
T |
|
| Q |
189 |
gttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctc |
288 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
11828759 |
gttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctt |
11828858 |
T |
|
| Q |
289 |
tgaaattcattg |
300 |
Q |
| |
|
||||||| |||| |
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|
| T |
11828859 |
tgaaatttattg |
11828870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 11860795 - 11861002
Alignment:
| Q |
93 |
gattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtcttgtta |
192 |
Q |
| |
|
|||||||| |||||||||| |||| ||| || |||||| |||| |||||| |||| |||| |||||||| |||||| ||| | |||| |||| || |
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|
| T |
11860795 |
gattgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggta |
11860894 |
T |
|
| Q |
193 |
agtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctctgaa |
292 |
Q |
| |
|
| ||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
11860895 |
aatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaa |
11860994 |
T |
|
| Q |
293 |
attcattg |
300 |
Q |
| |
|
|||||||| |
|
|
| T |
11860995 |
attcattg |
11861002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 357 - 522
Target Start/End: Original strand, 11861038 - 11861203
Alignment:
| Q |
357 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
456 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| || || ||| ||||||||||||| |||||||||||||| |
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|
| T |
11861038 |
ccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcattt |
11861137 |
T |
|
| Q |
457 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
522 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | ||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
11861138 |
caaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttgatgatg |
11861203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 357 - 522
Target Start/End: Original strand, 11828906 - 11829071
Alignment:
| Q |
357 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
456 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||| || ||| |||||||| ||||||| || |||| ||||||||||||| |||||||||||||| |
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|
| T |
11828906 |
ccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttcagttgcattt |
11829005 |
T |
|
| Q |
457 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
522 |
Q |
| |
|
|||| ||||| ||||||| |||||| ||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
11829006 |
caaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtcttgatgatg |
11829071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 84 - 300
Target Start/End: Original strand, 11732458 - 11732674
Alignment:
| Q |
84 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
183 |
Q |
| |
|
||||| ||||| ||||| | |||| ||| ||||||| || ||||||||||| ||||||||||| | |||||| ||||| |||||| |||| | |||| |
|
|
| T |
11732458 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttatctaaatggctcgattcgcttcaat |
11732557 |
T |
|
| Q |
184 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
283 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||| | ||||| || ||||| ||||| |||||| ||||||||| |||||| |||||||| |||| |
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|
| T |
11732558 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
11732657 |
T |
|
| Q |
284 |
ctctctgaaattcattg |
300 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
11732658 |
atctcttgaattcattg |
11732674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 499
Target Start/End: Original strand, 11732735 - 11732876
Alignment:
| Q |
361 |
ccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatga---gatttggggtaatgatagaccatatttcagttgcatttc |
457 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||| || | | || | ||||||| |||| ||||||||| |
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|
| T |
11732735 |
ccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcccttgcatttc |
11732834 |
T |
|
| Q |
458 |
aaaactaaacatccaatgttgtcctaaattagcttgcatgcc |
499 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
11732835 |
aaaactaaatatccgatgttgtcctaaattagcatgcgtgcc |
11732876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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