View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15368_low_6 (Length: 523)
Name: NF15368_low_6
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 2243145 - 2242649
Alignment:
| Q |
9 |
agcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaag |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2243145 |
agcacaaataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaactttttttaaatattttctctgaactttcatccttcaaag |
2243046 |
T |
|
| Q |
109 |
tctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaaaccaaa |
208 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243045 |
tctaaggattgctaagttatttcaacttatctagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcacatcttggcatacaaaccaaa |
2242946 |
T |
|
| Q |
209 |
caccaaaaatttcatcctttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaatt |
308 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242945 |
caccaaaaatttcatcccttgccaatccccttcaccaaattccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaatt |
2242846 |
T |
|
| Q |
309 |
cgaaacaaacagaacaatcgaatcagccgcaaataagcaacgtactcttattaaagtccctaataaaagtggtcagctatactgtttagagaagtttaca |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242845 |
cgaaacaaacagaacaatcgaatcagccgcaaataagcaacgtactcttattacagtccctaataaaagtggtcagctatactgtttagagaagtttaca |
2242746 |
T |
|
| Q |
409 |
ttgtaggttgagatttaatccaatatgtcaagaaaagccagctagtgtctttagaatatgtgattcccatatgccacaatattcaaagcaacagcag |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242745 |
ttgtaggttgagatttaatccaatatgtcaagaaaagccagctagtgtctttagaatatgtgattcccatatgccacaatattcaaagcaacagcag |
2242649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 31780352 - 31780117
Alignment:
| Q |
9 |
agcacagataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacnnnnnnnnaatattttctctgaactttcatccttcaaag |
108 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
31780352 |
agcacaaataaggaaaaaca-aaaaaggttaaaggaatttatgaagtacatacatagaaactttttttaaatattttctctgaactttcatccttcaaag |
31780254 |
T |
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| Q |
109 |
tctaaggattgctaag----ttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactg------tcatttggaatcaca-tcttggca |
197 |
Q |
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|||||||||||| ||| ||||||| ||||| | |||| ||||||||||| | |||||||||||||| | ||||||||||||| |||| || |
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| T |
31780253 |
tctaaggattgccaagttatttatttccacttacctagag-aaagtaacatgtctacaatttcttcactgtgtcattaatttggaatcacagtcttcaca |
31780155 |
T |
|
| Q |
198 |
tacaaaccaaacaccaaaaatttcatcctttgccaatc |
235 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
31780154 |
tacaaaccaaacaccaaaaatttcatcccttgccaatc |
31780117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 29057292 - 29057137
Alignment:
| Q |
82 |
ttttctctgaactttcatccttcaaagtctaaggattgctaagttatttcaacttatccagagaaaagtaacatgattgcaatttcttcactgtcatttg |
181 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||||| ||||||||| ||| | || | || |
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| T |
29057292 |
ttttctctgaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctg |
29057193 |
T |
|
| Q |
182 |
gaatcaca-tcttggcatacaaaccaaacaccaaaaatttcatcctttgccaatcc |
236 |
Q |
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||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||| |
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| T |
29057192 |
caatcacagtcttcacatagaaatcaaacaccaaaaatttcatcccttgccaatcc |
29057137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 341
Target Start/End: Complemental strand, 29056898 - 29056806
Alignment:
| Q |
249 |
tccaactcccattactgcgccaaccattgtatgtgttgccgatatcggtagccccaaattcgaaacaaacagaacaatcgaatcagccgcaaa |
341 |
Q |
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|||||||||||||||||| ||||| | |||||||| |||||||||||||||| | || ||| |||||||||||| ||| |||||||||| |
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| T |
29056898 |
tccaactcccattactgcaccaactagcgtatgtgtccccgatatcggtagccctagctttgaagcaaacagaacaactgaagcagccgcaaa |
29056806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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