View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15368_low_8 (Length: 443)
Name: NF15368_low_8
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 6788280 - 6788383
Alignment:
| Q |
13 |
tgttgtaaattgtaatcatctctatccagtaatataaatcttgtttcagttttaagcagtctcaatgcaagtactttaacaacatgctgctacatttgtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6788280 |
tgttgtaaattgtaatcatctctatccagtaatacaaatcttgtttcagttttaagcagtctcaatgcaagtactttaacaacatgctgctacatttgtg |
6788379 |
T |
|
| Q |
113 |
taac |
116 |
Q |
| |
|
|||| |
|
|
| T |
6788380 |
taac |
6788383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 6548911 - 6549014
Alignment:
| Q |
183 |
cttctaacccaatcttgatatttcttggaaatagaacttaggggaaagacttgtgtaagcaaataatgatttggacatttcacctcttattttatatcct |
282 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| |||| | ||||||| |||| |||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
6548911 |
cttctaatccaatcttgatatttcttggcaatagaacttacgggatacacttgtgcaagc-tataatgatttggacatttcagctcttattctatatcct |
6549009 |
T |
|
| Q |
283 |
actga |
287 |
Q |
| |
|
||||| |
|
|
| T |
6549010 |
actga |
6549014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 336
Target Start/End: Original strand, 8572159 - 8572309
Alignment:
| Q |
184 |
ttctaacccaatcttgatatttcttggaaatagaacttaggggaaagacttgtgtaagcaaataatgatttggacatttcacctcttattttatatccta |
283 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||||||||| || | |||||| |||||| | ||||||||| |||| |||| || || ||| || |
|
|
| T |
8572159 |
ttctaaaccaatcttgatatttattggcaatagaacttaggtgatacgcttgtgcgagcaaagactgatttggaaattt--cctcactttctaaatcgta |
8572256 |
T |
|
| Q |
284 |
ctgagttgtcgaaggttgtgacttatgggggcttctttcaaacaaagttgtat |
336 |
Q |
| |
|
| |||| | ||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
8572257 |
ccgagtattagaaggttgtgacttatgagggcttctttcaaatatagttgtat |
8572309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 6526008 - 6526096
Alignment:
| Q |
114 |
aacaaaatggttttgacagaaattatatacaagagctttaactttctttaatattattgaatgtaatttcttctaacccaatcttgatat |
203 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||| |||| |||||| |||| | ||| | ||||| ||| ||| ||||||||||||| |
|
|
| T |
6526008 |
aacaaaatggtttt-acagaaattaaataaaagagcattaattttcttcaatactcttgcttttaattgcttttaatccaatcttgatat |
6526096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 6944018 - 6943938
Alignment:
| Q |
125 |
tttgacagaaattatatacaagagctttaactttctttaatattattgaatgtaatttcttctaacccaatcttgatattt |
205 |
Q |
| |
|
||||| |||||| ||||| || |||||| ||||||||||||| ||| | ||||| ||||||| ||||||||||||||| |
|
|
| T |
6944018 |
tttgatagaaatcatataacagtgctttagttttctttaatattcttgcctttaattgcttctaatccaatcttgatattt |
6943938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 42151420 - 42151282
Alignment:
| Q |
126 |
ttgacagaaattatatacaagagctttaactttctttaatattattgaatgtaatttcttctaacccaatcttgatatttcttggaaatagaacttaggg |
225 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||||||| ||| ||||| |||||| |||||||| |||||| |||| ||||||||||||| |
|
|
| T |
42151420 |
ttgacaaaaattatataaaagagctttaattttctttaatattcttgctcttaattgtttctaatccaatcttaatattttttggcaatagaacttaggt |
42151321 |
T |
|
| Q |
226 |
gaaagacttgtgtaagcaaataatgatttggacatttca |
264 |
Q |
| |
|
|| | | ||||| ||| |||||| ||||||| |||||| |
|
|
| T |
42151320 |
gatacatttgtgcaagttaataataatttggagatttca |
42151282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 31981775 - 31981828
Alignment:
| Q |
231 |
acttgtgtaagcaaataatgatttgg-acatttcacctcttattttatatccta |
283 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
31981775 |
acttgtgaaagctaataatgatttggtacatttcacctcttattctaaatccta |
31981828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University