View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15368_low_9 (Length: 421)
Name: NF15368_low_9
Description: NF15368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15368_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 49623687 - 49623284
Alignment:
| Q |
1 |
tggcattattggttatcaagttatcatgatttggaccatttctgttgcaattttgaataaaataataaatcaatagtggtcagaaaggtttaactcaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49623687 |
tggcattattggttatcaagttatcatgatttggaccatttctgttgcaattttgaataaaataataaatcaaccgtggtcagaaaggtttaactcaatt |
49623588 |
T |
|
| Q |
101 |
gacaatgccaatactgataaactgaacattttcatctaagtacgacccggtgttattatatgttgttaccttctttgttttgttgttgttggcaaatata |
200 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49623587 |
gacaatgccaatattaataaactgaacattttcatttaagtacgacccggtgttattatatgttgttaccttctttgttttgttgttgttggcaaatacg |
49623488 |
T |
|
| Q |
201 |
atgttctcatgttagtttttgtagtagtttgccctccnnnnnnnacatatcactaattttttggaagagttatttaaagtgttaatttgtgatgttcaag |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49623487 |
atgttctcatgctagtttttgtagtagtttgcc--tctttttttacatatcactaattttttggaagagttatttaaagtgttaatttgtgatgttcaag |
49623390 |
T |
|
| Q |
301 |
tttgtttggtaaaaaatgctcag---nnnnnnnnnnngagataaaatgtttcaatcctttaatctcatatttttccaacatatttatcacacaaaaatgg |
397 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49623389 |
tttgtttggtaaaaaatgctcagttttttttttttttgagataaaatgtttcaaccctttaatctcatatttttccaacatatttatcacacaaaaatgg |
49623290 |
T |
|
| Q |
398 |
ataaat |
403 |
Q |
| |
|
|||||| |
|
|
| T |
49623289 |
ataaat |
49623284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University