View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15369_high_3 (Length: 347)
Name: NF15369_high_3
Description: NF15369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15369_high_3 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 3214966 - 3215311
Alignment:
| Q |
1 |
agagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacag |
100 |
Q |
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| T |
3214966 |
agagttttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacag |
3215065 |
T |
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| Q |
101 |
agataactggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataag |
200 |
Q |
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| T |
3215066 |
agataactggactataaccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattgaagcaagattgtctataag |
3215165 |
T |
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| Q |
201 |
attgcgagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacgcgaatgttgtcttgcctttgcaagcatctgctt |
300 |
Q |
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| T |
3215166 |
attgcgagtatgaatgagatactcttgcaccgtacgattatcaaacgaggtagcacgcaattcaacacgaa-gttgtcttgcctttgcaagcatttgctt |
3215264 |
T |
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| Q |
301 |
ttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
347 |
Q |
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| T |
3215265 |
ttgaaaataggtcacaagtttgttctagagtttatacgcatgcgaag |
3215311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 7 - 347
Target Start/End: Original strand, 32460486 - 32460826
Alignment:
| Q |
7 |
ttcttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataa |
106 |
Q |
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| T |
32460486 |
ttcttcttgaacttgtcaagacgagtctcatgagcaattaacagagactctacctcatcaatatcaatagtgtcaaatttgctttcaacaactgaaatca |
32460585 |
T |
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| Q |
107 |
ctggactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatcatcaattg-aagcaagattgtctataagattgc |
205 |
Q |
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| T |
32460586 |
ctggactatactcttgtggtaaaccttctaaaattacatctaaatgctgagtaatgggaactggatcaccaatggaaagcaagattatcaattaaattgc |
32460685 |
T |
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| Q |
206 |
gagtacgaatgagatactcttgtaccgtacgattatcaaacgaggtagcgcgcaattcaacgcgaatgttgtcttgcctttgcaagcatctgcttttgaa |
305 |
Q |
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| T |
32460686 |
gaatgcgaagaagatgctcctgtaccgtacgattatcaagagaagtagaacgcagttcaacacgta-actgccttgcctttgcacgcatctgcttgtgaa |
32460784 |
T |
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| Q |
306 |
aataggtcacaagtttgttctagagtttatacgcatgcgaag |
347 |
Q |
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| T |
32460785 |
aataggtcacaagtttgttccgaagttcatacgcatgcgaag |
32460826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 36399448 - 36399611
Alignment:
| Q |
10 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
109 |
Q |
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| T |
36399448 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacagatataacag |
36399547 |
T |
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| Q |
110 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaattggatc |
173 |
Q |
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| T |
36399548 |
gactaaaatcttgcggtaaaccttctaaaatcacatccaaatgttgattaacaggaactggatc |
36399611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 52665850 - 52665923
Alignment:
| Q |
10 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaa |
83 |
Q |
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| T |
52665850 |
ttcttgaatttatcaagacgtgtttcatgagcaagaagaagagactcaacttcgtcaatgtcaataacatcaaa |
52665923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 24789296 - 24789452
Alignment:
| Q |
10 |
ttcttgaacttgtcaagacgagtttcatgagcaattagcagagattcaacctcatctatgtcaataacatcaaacttactctcaacaacagagataactg |
109 |
Q |
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| T |
24789296 |
ttcttgaatttatcaagacgtgtttcatgagtaagaagaagagactcaacttcgtcaacgtcaataacatcaaatttgctttccactacaaatataatag |
24789395 |
T |
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| Q |
110 |
gactatatccatgtggtaaaccttccaaaataacatctaagtgctgattgacaggaa |
166 |
Q |
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| T |
24789396 |
gactaaaatcttgtggtaaaccttctaaaatcacatccaaatgttgattaacaggaa |
24789452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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