View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15369_high_4 (Length: 331)
Name: NF15369_high_4
Description: NF15369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15369_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 93 - 322
Target Start/End: Original strand, 25254532 - 25254761
Alignment:
| Q |
93 |
tacatatatttcataaaggaagcatttatgtgaaggtaataatttttatttatgaggattctaaccttactaagccatatgcaaaaccaaactgttccta |
192 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25254532 |
tacatatatttcgtaaaggaagcatttatgtgaaggtaataatttttatgtatgcgaattctaaccttactaagccatatacaaaaccaaactgttccta |
25254631 |
T |
|
| Q |
193 |
gagaaccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25254632 |
gagaaccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgta |
25254731 |
T |
|
| Q |
293 |
taccagagctaatgatctacttctctctgc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25254732 |
taccagagctaatgatctacttctctctgc |
25254761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 11319736 - 11319857
Alignment:
| Q |
198 |
ccaaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgtatacca |
297 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| | | || ||||||||||| || || |||| || ||||| || ||||||||||||||||| ||||| | |
|
|
| T |
11319736 |
ccaaatgagtagaacacagatggccatccaaatttttggattaggaaaggcgagaatcccaagcctgtgacagaaccaaggtacatgccactatatacta |
11319835 |
T |
|
| Q |
298 |
gagctaatgatctacttctctc |
319 |
Q |
| |
|
| || | |||||| |||||||| |
|
|
| T |
11319836 |
gtgcaagtgatctgcttctctc |
11319857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University