View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15369_low_1 (Length: 454)
Name: NF15369_low_1
Description: NF15369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15369_low_1 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 3744390 - 3744836
Alignment:
| Q |
1 |
ctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaata |
100 |
Q |
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| T |
3744390 |
ctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaata |
3744489 |
T |
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| Q |
101 |
catcatatttccctctcttaatccacaattactaattcaaaatcaagaacaaagaacaagaacaatcacaatcacagaaacagaataactgcattgcaaa |
200 |
Q |
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| T |
3744490 |
catcatatttctctctcttaatccacaattactaattcaaaatcaaga-------acaagaacaatcaaaatcacagaaacagaataactgcattgcaaa |
3744582 |
T |
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| Q |
201 |
tcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctggtactcttctgcccccaaagaccatcacac |
300 |
Q |
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| T |
3744583 |
tcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctagtactcttctgcccccaaagaccatcacac |
3744682 |
T |
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| Q |
301 |
atacactacatcattattcaaaacaaaaattcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaaca |
400 |
Q |
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| T |
3744683 |
atacactacatcattattcaaaacaaaaattcaagcaacctgaacctgaatggttctaggtttcttaggctgaggaggaggcaatttctgaacagtaaca |
3744782 |
T |
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| Q |
401 |
ctcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctca |
454 |
Q |
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| T |
3744783 |
ctcagaaccccatcttgacaaacagcagaaacagcatcagtattagcattctca |
3744836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
330 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
374 |
Q |
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| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 433
Target Start/End: Original strand, 48302914 - 48303016
Alignment:
| Q |
331 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
430 |
Q |
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| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
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| Q |
431 |
aca |
433 |
Q |
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| T |
48303014 |
aca |
48303016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 454
Target Start/End: Complemental strand, 10462434 - 10462347
Alignment:
| Q |
370 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctca |
454 |
Q |
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| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctca |
10462347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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