View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_high_10 (Length: 313)
Name: NF1536_high_10
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 49511959 - 49512231
Alignment:
| Q |
19 |
tatcgacctcatatatagtcacatcgagcttcccgtgtagtaagtgcaacatgacgttatatatagtttatgtttcttttccccttgctttgtgcaatca |
118 |
Q |
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| T |
49511959 |
tatcgacctcatatatagtcacatcgagcttcccgtgtagtaagtgcaacatgacgttatatatagtttatgtttcttttacccttgctttgtgcaatca |
49512058 |
T |
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| Q |
119 |
aaacaagtgtcatacatatatgaaataatgcaaaagtgaaattttcatgtagacacgtaataagtaaagtaagagtacttacatggagatggaggttaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49512059 |
aaacaagtgtcatacatatatgaaataatgcaaaagtgaaattttcatgtag--acgtaat-----aagtaagagtacttacatggagatggaggttaag |
49512151 |
T |
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| Q |
219 |
gagggaaaattttgatgatgatactgtcgttatccttatgatgaaggccttggtttggtttgaattggtatatttatagg |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49512152 |
gagggaaaattttgatgatgatattgtcgttatccttatgatgaaggcattggtttggtttgaattggtatatttatagg |
49512231 |
T |
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