View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_high_2 (Length: 567)
Name: NF1536_high_2
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 128 - 552
Target Start/End: Original strand, 17998145 - 17998573
Alignment:
| Q |
128 |
atgataacatgcttagttaataaagaagcaccgacatgtcataatcaaatatgta----acggttccacacgaaaaccaaataatattggtaagcatatc |
223 |
Q |
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| T |
17998145 |
atgataacatgcttagttaaaaaagaagcaccgacatgtcataatcaaatatgtatgcaacggttacacacgaaaaccaaataatattgctaagcatatc |
17998244 |
T |
|
| Q |
224 |
ccattacgatacttt-gccttttagtcttctacattcaaattttcctataaatacatcaatgcattaaaaccatttcataattgtcacatacattcaaca |
322 |
Q |
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| T |
17998245 |
ccattacgatacttttgccttttagtcttctacattcaaattttcctataaatacatcaatgcattaaaaccatttcataattgtcacatacattcaaca |
17998344 |
T |
|
| Q |
323 |
ccatataacccctcacttactcttttcataatcacattagtcacaaaacaaaaatggagtccaaaggatcagttttaattaagcttctattgctgctgaa |
422 |
Q |
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| T |
17998345 |
ccataaaacccctcacttactcttttcataatcacattagtcacaaaacaaaaatggagtccaaaggatcagttttaattaagcttctattgctgctgaa |
17998444 |
T |
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| Q |
423 |
tgtaacagttctatgtgcttcacaatcacaggattttgatttcttttactttgttcaacaggtaatataaataaaatttaaatgtttatcatgattttag |
522 |
Q |
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| T |
17998445 |
tgtaacagttctatgtgcttcacaatcacaggattttgatttcttttactttgttcaacaggtaatataaataaaattt-aatgtttatcatgattttag |
17998543 |
T |
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| Q |
523 |
ttggtaagagataaaactcgtatgttttct |
552 |
Q |
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| T |
17998544 |
ttggtaagagataaatctcgtatgttttct |
17998573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 265 - 493
Target Start/End: Original strand, 18005638 - 18005863
Alignment:
| Q |
265 |
ttcctataaatacatcaatgcattaaaaccatttcataattgtcacatacattcaacaccatataacccctcacttactcttttcataa-tcacattagt |
363 |
Q |
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| T |
18005638 |
ttcctataaatacatcaatgcattaagatcatttcataatcatcacatacactcaacaccataaaatcccccacttactcttttgagaaattacattagt |
18005737 |
T |
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| Q |
364 |
cacaaaacaaaaatggagtccaaaggatcagttttaattaagcttctattgctgctgaatgtaacagttctatgtgcttcacaatcacaggattttgatt |
463 |
Q |
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| T |
18005738 |
ctaaaaa----aatggagttcaaagggtcatttttaattaagcttctcttgcttctgcatgtatcaattctctgtgcttcacagtcacatgattttgatt |
18005833 |
T |
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| Q |
464 |
tcttttactttgttcaacaggtaatataaa |
493 |
Q |
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| T |
18005834 |
tcttctactttgttcaacaggtactataaa |
18005863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 17997994 - 17998025
Alignment:
| Q |
8 |
aaattattctagtctagacaaaagttaaaata |
39 |
Q |
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| T |
17997994 |
aaattattctagtctagacaaaagttaaaata |
17998025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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