View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_high_4 (Length: 483)
Name: NF1536_high_4
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 1434597 - 1434828
Alignment:
| Q |
13 |
attctcaaaacaaaagagtcattggaaattcatcttaccttcaatgataccaaaccataaatgttgattcttgcatctggaaattcacggctccaaacat |
112 |
Q |
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| T |
1434597 |
attctcaaaacaaaagagtcattggaaattcatcttaccttcaatgataccaaaccataaatgttgattcttgcatctggaaattcacggctccaaacat |
1434696 |
T |
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| Q |
113 |
agacaatcatgaaaactaaagaaattcccatgaatggagaccataaatatggcacaacagccatcacctaagaaaaggatgaaactaaattaacggaaca |
212 |
Q |
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| T |
1434697 |
agacaatcatgaaaactaaagaaattcccatgaatggagaccataaatatggcacaacagccatcacctaagaaaaggatgaaactaaattaacggaaca |
1434796 |
T |
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| Q |
213 |
aatagacggagcaatagaaaagtcattttcat |
244 |
Q |
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| T |
1434797 |
aaaagagggagcaatagaaaagtcattttcat |
1434828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 244 - 466
Target Start/End: Original strand, 1434870 - 1435092
Alignment:
| Q |
244 |
tagcttaactcaattggtatatacattacataacatatacatgggtcgaggtttgaatctgaaacacctacttattcatcgtaagaggtgaacttttaac |
343 |
Q |
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| T |
1434870 |
tagcttaactcaattggtataaacattacataacatatacatgggtcgaggtttgaatctcaaacacctatttattcatcctaagaggtgaacttttaac |
1434969 |
T |
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| Q |
344 |
cactaatctgcttnnnnnnngagttaaataaattgtatttgttcacacgtaccaaaagtgagagtgcgccaaatatcaacatccaaacaaaatctgcagt |
443 |
Q |
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| T |
1434970 |
cactaatctgcttaaaaaaagagttgaataaattgtatttgttcgcacgtaccaaaagtgagagtgcgccaaatatcaacatccaaacaaaatctgcagt |
1435069 |
T |
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| Q |
444 |
tctcttgtcaaatggacctcttt |
466 |
Q |
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| T |
1435070 |
tctcttgtcaaatggacctcttt |
1435092 |
T |
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