View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_high_5 (Length: 383)
Name: NF1536_high_5
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 3427505 - 3427158
Alignment:
| Q |
21 |
ttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatgaaagc |
120 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3427505 |
ttccttcatcaaatcaacccttaagggtaagacaagcagcacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgaactcatgaaagc |
3427406 |
T |
|
| Q |
121 |
cttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgat |
220 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3427405 |
cttaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatggtgcatattcccaagttggtttccctaatcttgat |
3427306 |
T |
|
| Q |
221 |
cttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttg |
320 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427305 |
cttcaagttcataattcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttg |
3427206 |
T |
|
| Q |
321 |
ctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3427205 |
ctttaccattttggaactatgacgctccaaatggcatgcaatttccct |
3427158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 3433700 - 3433349
Alignment:
| Q |
17 |
aaatttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatga |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
3433700 |
aaatttccttcatcaactcaacccttaagggtaagacaagcagcacatttggtcaacgatgaatatctacaaaaatacaaaaaagccattgaactcatga |
3433601 |
T |
|
| Q |
117 |
aagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaacct |
216 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
3433600 |
aagccttaccatccaatgatccacgtaatttcatacaacaagcaaacatccattgtgcttattgtgatggtgcatattcccaagttggttttcctaatct |
3433501 |
T |
|
| Q |
217 |
tgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433500 |
tgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacc |
3433401 |
T |
|
| Q |
317 |
tttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3433400 |
tttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
3433349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 11896767 - 11897118
Alignment:
| Q |
17 |
aaatttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatga |
116 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
11896767 |
aaatttcctccattaactcaacccttaagggttagacaagcagcacatttggtcaacgatgaatatcttcaaaaatacaaaaaagccattgaactcatga |
11896866 |
T |
|
| Q |
117 |
aagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaacct |
216 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11896867 |
aagccttaccatccaatgatccacgtagtttcatgcaacaagcaaacgtccactgtgcttattgtgatggtgcatattcccaagttggcttccctaacct |
11896966 |
T |
|
| Q |
217 |
tgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacc |
316 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
11896967 |
tgatcttcaagttcatggctcttggctcttttttccttttcataggtggtacctttatttctatgaaaggatcttaggtagcttgatcaatgatccaacc |
11897066 |
T |
|
| Q |
317 |
tttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
11897067 |
tttgctttaccattttggaactatgacgctcctaatggcatgcgatttccct |
11897118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 11912104 - 11912451
Alignment:
| Q |
21 |
ttccttcatcaactcaacccttaagggttagacaagcagcacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatgaaagc |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||| |||| || ||||| |||||||| ||||| ||||| |||||||||| |||| |||||| |
|
|
| T |
11912104 |
ttccttcatcaaatcaacccttaagggtaagacaagcagcaaatttggttaatgacgaatatcttcaaaaatacaagaaagccattgagctcacgaaagc |
11912203 |
T |
|
| Q |
121 |
cttaccttccagtgatccacgtagtttcatacaacaagcaaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgat |
220 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11912204 |
attaccatccaatgatccacgtagtttcatacaacaagcaaacatccattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgat |
11912303 |
T |
|
| Q |
221 |
cttcaagttcatagttcttggctcttttttccttttcatagatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttg |
320 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||| |||||| |
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|
| T |
11912304 |
cttcaagttcataactcttggctcttttttccttttcatagatggtacctttatttccatgagagaatcttgggtagtttgatcaatgatccagcctttg |
11912403 |
T |
|
| Q |
321 |
ctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
368 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11912404 |
ctttaccattttggaactttgacgctcctaatggcatgcaatttccct |
11912451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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