View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1536_high_6 (Length: 381)

Name: NF1536_high_6
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1536_high_6
NF1536_high_6
[»] chr8 (22 HSPs)
chr8 (225-381)||(23798339-23798495)
chr8 (210-381)||(42600634-42600807)
chr8 (224-381)||(10917258-10917416)
chr8 (232-381)||(23606707-23606848)
chr8 (284-381)||(45475745-45475842)
chr8 (284-381)||(13534764-13534861)
chr8 (284-381)||(13624304-13624401)
chr8 (284-381)||(41879109-41879206)
chr8 (307-381)||(2952299-2952373)
chr8 (307-381)||(30883280-30883354)
chr8 (307-381)||(3048595-3048669)
chr8 (307-381)||(5860822-5860896)
chr8 (309-354)||(25561635-25561680)
chr8 (311-355)||(8102845-8102889)
chr8 (309-356)||(15167540-15167587)
chr8 (309-356)||(41677300-41677347)
chr8 (309-354)||(8646129-8646174)
chr8 (309-353)||(30674507-30674551)
chr8 (309-356)||(7944649-7944696)
chr8 (309-355)||(11290113-11290159)
chr8 (309-354)||(15078689-15078734)
chr8 (340-381)||(37430236-37430277)
[»] chr7 (22 HSPs)
chr7 (210-381)||(47985047-47985218)
chr7 (231-381)||(24525762-24525912)
chr7 (220-381)||(38414953-38415114)
chr7 (210-381)||(10329487-10329659)
chr7 (220-373)||(19691958-19692111)
chr7 (210-381)||(20091358-20091530)
chr7 (231-381)||(23551148-23551299)
chr7 (210-378)||(48983924-48984093)
chr7 (294-381)||(25010371-25010458)
chr7 (231-381)||(8239560-8239712)
chr7 (291-381)||(8171616-8171706)
chr7 (307-381)||(18776843-18776917)
chr7 (320-381)||(29077184-29077245)
chr7 (309-355)||(17800348-17800394)
chr7 (340-381)||(10955468-10955509)
chr7 (210-263)||(25010303-25010356)
chr7 (309-356)||(23859002-23859049)
chr7 (309-355)||(7398380-7398426)
chr7 (340-381)||(12596364-12596405)
chr7 (309-354)||(26917810-26917855)
chr7 (309-354)||(27237551-27237596)
chr7 (309-354)||(12419623-12419670)
[»] chr2 (22 HSPs)
chr2 (210-381)||(26715981-26716152)
chr2 (210-381)||(9045882-9046053)
chr2 (231-381)||(10762643-10762793)
chr2 (210-381)||(27506818-27506991)
chr2 (210-362)||(8327517-8327671)
chr2 (210-381)||(24410286-24410461)
chr2 (284-381)||(29939940-29940037)
chr2 (307-381)||(3155167-3155241)
chr2 (307-381)||(4505844-4505918)
chr2 (307-381)||(12337526-12337600)
chr2 (318-381)||(6964968-6965031)
chr2 (307-381)||(8907157-8907231)
chr2 (309-354)||(12134169-12134214)
chr2 (309-356)||(24035672-24035719)
chr2 (309-356)||(29694312-29694359)
chr2 (309-356)||(37182598-37182645)
chr2 (309-356)||(38400726-38400773)
chr2 (340-381)||(3952989-3953030)
chr2 (340-381)||(7162767-7162808)
chr2 (309-354)||(11912887-11912932)
chr2 (309-349)||(10252335-10252375)
chr2 (310-354)||(13800674-13800718)
[»] chr1 (27 HSPs)
chr1 (210-381)||(9173100-9173271)
chr1 (232-381)||(1366955-1367104)
chr1 (210-381)||(19955581-19955753)
chr1 (210-381)||(17168819-17168992)
chr1 (210-381)||(13913559-13913732)
chr1 (272-381)||(27559564-27559673)
chr1 (231-381)||(44895539-44895688)
chr1 (210-381)||(40501867-40502040)
chr1 (284-381)||(23185366-23185463)
chr1 (284-381)||(4971695-4971792)
chr1 (308-381)||(9181082-9181155)
chr1 (272-381)||(51607517-51607624)
chr1 (291-381)||(5316626-5316716)
chr1 (307-381)||(27906794-27906868)
chr1 (307-381)||(44655703-44655777)
chr1 (284-381)||(50881369-50881466)
chr1 (340-381)||(3406413-3406454)
chr1 (340-381)||(3440366-3440407)
chr1 (324-381)||(5027528-5027585)
chr1 (340-381)||(14146295-14146336)
chr1 (340-381)||(41697214-41697255)
chr1 (309-356)||(39134849-39134896)
chr1 (309-360)||(5533251-5533302)
chr1 (340-381)||(6771786-6771827)
chr1 (340-381)||(16140050-16140091)
chr1 (309-354)||(26803889-26803934)
chr1 (311-356)||(38547162-38547207)
[»] chr4 (36 HSPs)
chr4 (220-381)||(19498373-19498534)
chr4 (212-381)||(16882472-16882641)
chr4 (210-381)||(40089374-40089546)
chr4 (231-381)||(32128464-32128614)
chr4 (210-381)||(24969292-24969467)
chr4 (210-381)||(16844877-16845051)
chr4 (272-381)||(34027500-34027609)
chr4 (241-381)||(43455608-43455746)
chr4 (272-381)||(38352332-38352441)
chr4 (223-381)||(2790818-2790977)
chr4 (272-381)||(54083319-54083428)
chr4 (231-381)||(37777300-37777452)
chr4 (284-378)||(35465040-35465134)
chr4 (284-381)||(47128920-47129017)
chr4 (284-381)||(10978833-10978930)
chr4 (284-381)||(23509875-23509972)
chr4 (284-381)||(10428282-10428379)
chr4 (284-381)||(13460140-13460237)
chr4 (284-381)||(35779402-35779499)
chr4 (291-381)||(34768651-34768741)
chr4 (307-381)||(38209668-38209742)
chr4 (307-381)||(55255225-55255299)
chr4 (284-381)||(48209173-48209270)
chr4 (307-355)||(36118584-36118632)
chr4 (309-356)||(37746847-37746894)
chr4 (340-381)||(5128919-5128960)
chr4 (340-381)||(32915374-32915415)
chr4 (309-353)||(2135447-2135491)
chr4 (345-381)||(54780771-54780807)
chr4 (309-356)||(39329518-39329565)
chr4 (309-355)||(15735030-15735076)
chr4 (309-355)||(30507199-30507245)
chr4 (340-381)||(1105521-1105562)
chr4 (309-354)||(36178607-36178652)
chr4 (340-381)||(37514648-37514689)
chr4 (309-354)||(40217164-40217209)
[»] chr3 (26 HSPs)
chr3 (210-381)||(43207315-43207490)
chr3 (210-381)||(53506962-53507133)
chr3 (220-381)||(9878765-9878925)
chr3 (210-381)||(50939311-50939484)
chr3 (211-381)||(37168223-37168395)
chr3 (272-381)||(44708396-44708505)
chr3 (210-381)||(54407236-54407407)
chr3 (272-381)||(34290714-34290823)
chr3 (231-381)||(48157015-48157167)
chr3 (284-381)||(8073416-8073512)
chr3 (284-375)||(3953980-3954071)
chr3 (307-381)||(54619281-54619355)
chr3 (307-381)||(38681171-38681245)
chr3 (307-381)||(29620466-29620540)
chr3 (308-381)||(18372434-18372507)
chr3 (309-356)||(8420258-8420305)
chr3 (307-381)||(27078647-27078721)
chr3 (307-381)||(27084444-27084518)
chr3 (309-355)||(29598040-29598086)
chr3 (340-381)||(21582758-21582799)
chr3 (340-381)||(47467671-47467712)
chr3 (309-354)||(49393023-49393068)
chr3 (340-381)||(53149392-53149433)
chr3 (307-375)||(36716109-36716177)
chr3 (309-356)||(52374590-52374637)
chr3 (340-381)||(42098788-42098829)
[»] chr5 (23 HSPs)
chr5 (210-381)||(38869438-38869609)
chr5 (210-381)||(16198869-16199042)
chr5 (210-381)||(9364144-9364316)
chr5 (210-381)||(27923935-27924107)
chr5 (210-381)||(16799402-16799572)
chr5 (231-381)||(28822417-28822568)
chr5 (221-381)||(40389611-40389770)
chr5 (272-381)||(7670840-7670949)
chr5 (287-381)||(16592149-16592243)
chr5 (307-381)||(34756441-34756515)
chr5 (284-381)||(27078939-27079036)
chr5 (284-381)||(30854258-30854354)
chr5 (340-381)||(2274874-2274915)
chr5 (340-381)||(15480164-15480205)
chr5 (309-354)||(15639575-15639620)
chr5 (340-381)||(19523183-19523224)
chr5 (309-354)||(34425832-34425877)
chr5 (316-355)||(22648860-22648899)
chr5 (309-351)||(11242447-11242489)
chr5 (309-354)||(2024766-2024811)
chr5 (340-381)||(36187954-36187995)
chr5 (309-353)||(7079561-7079605)
chr5 (309-353)||(40794452-40794496)
[»] chr6 (14 HSPs)
chr6 (225-381)||(27788766-27788922)
chr6 (210-381)||(20711798-20711968)
chr6 (210-381)||(17353809-17353982)
chr6 (231-381)||(28075660-28075811)
chr6 (220-381)||(34397724-34397885)
chr6 (231-381)||(235304-235453)
chr6 (225-376)||(19987032-19987184)
chr6 (284-381)||(19737770-19737867)
chr6 (307-381)||(21280499-21280573)
chr6 (307-381)||(13727477-13727551)
chr6 (307-381)||(21479448-21479522)
chr6 (307-381)||(33774071-33774145)
chr6 (340-381)||(24711077-24711118)
chr6 (340-381)||(30832602-30832643)
[»] scaffold0039 (1 HSPs)
scaffold0039 (277-381)||(106459-106563)
[»] scaffold0070 (1 HSPs)
scaffold0070 (284-381)||(1271-1368)
[»] scaffold0027 (1 HSPs)
scaffold0027 (211-263)||(4200-4252)
[»] scaffold0007 (1 HSPs)
scaffold0007 (309-356)||(230986-231033)
[»] scaffold0022 (2 HSPs)
scaffold0022 (309-355)||(40012-40058)
scaffold0022 (309-355)||(138072-138118)
[»] scaffold0001 (1 HSPs)
scaffold0001 (340-381)||(181903-181944)
[»] scaffold0229 (1 HSPs)
scaffold0229 (275-381)||(23803-23908)
[»] scaffold1320 (1 HSPs)
scaffold1320 (309-354)||(1285-1330)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 225 - 381
Target Start/End: Complemental strand, 23798495 - 23798339
Alignment:
Q  225 aatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattaga 324  Q
    ||||| |||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  23798495 aatttttttttaatacccactagtattactgccctccaattgtttttaatacccccaaccattttctgtccccttgttttagtcttttaggcctattaga 23798396  T
Q  325 attaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23798395 attaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 23798339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 42600634 - 42600807
Alignment:
Q  210 tcagtcaagagcctcaatttg-tttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | ||||||||||  ||||||||||||||||||| |||||||||||||         |||| |||||||||||||||||||||||||||||      
T  42600634 tcagtcatgggcctcaattttatttttaatacccactagtactactgccctccaaaaaaaatttaataaccccagccattttctgtccccttgttttagc 42600733  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42600734 cttttaggcctattagaattaggtcttcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 42600807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 224 - 381
Target Start/End: Original strand, 10917258 - 10917416
Alignment:
Q  224 caatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatcttttaggcctatta 322  Q
    |||||| ||||||||||||||||||| |||||| || |||         ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  10917258 caatttttttttaatacccactagtactactgctcttcaaaaaaaatttaatacccccagccattttctgtccccttgttttagccttttaggcctatta 10917357  T
Q  323 gaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  10917358 gaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtataaggtagtcat 10917416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 23606848 - 23606707
Alignment:
Q  232 ttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggt 331  Q
    |||||||||||||||||| |||||||||||||        |||||||||||        ||||||||||||||| |||||||||||||||||||||||||    
T  23606848 ttttaatacccactagtaatactgccctccaattttttttaatacccccag--------tgtccccttgttttagtcttttaggcctattagaattaggt 23606757  T
Q  332 tctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23606756 cctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 23606707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 45475745 - 45475842
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45475745 cattttctgtcctcttgttttagccttttaggcctattagaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 45475842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 13534861 - 13534764
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  13534861 cattttctgtcctcttgttttagccttttaggattattagaattagtttctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 13534764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 13624401 - 13624304
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  13624401 cattttctgtcctcttgttttagccttttaggattattagaattagtttctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 13624304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 41879109 - 41879206
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||| ||||||||| ||||||||||    
T  41879109 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggtttctcatgtattcggtagtcat 41879206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 2952373 - 2952299
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  2952373 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 2952299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 30883280 - 30883354
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  30883280 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 30883354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 3048669 - 3048595
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||| | ||||||| ||||||||||||||||    
T  3048669 tcttttaggattattagaattagttcctcttgattttggtgttaggtgagggttcctcgtgtatacggtagtcat 3048595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 5860896 - 5860822
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| |||||||||||||| || ||| |||||||||| |||||||||    
T  5860896 tcttttaggattattagaattagttcctcttgattttggtgttaggttggggtttctcatgtatatggtagtcat 5860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 25561680 - 25561635
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25561680 ttttaggcctattagaattgggtcctcttgcttttggtgttaggtg 25561635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 8102845 - 8102889
Alignment:
Q  311 ttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  8102845 ttaggcctattagaattgggtcctcttgcttttggtgttaggtgg 8102889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 15167587 - 15167540
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  15167587 ttttaggcctattagaattgggtcctcttacttttggtgttaggtggg 15167540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 41677347 - 41677300
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  41677347 ttttaggcctattagaatcgggtcctcttgcttttggtgttaggtggg 41677300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 8646129 - 8646174
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||    
T  8646129 ttttaggcctattcgaattaggtcatcttgcttttggtgttaggtg 8646174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 30674551 - 30674507
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggt 353  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||    
T  30674551 ttttaggtctatttgaattgggttctcttgcttttggtgttaggt 30674507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 7944696 - 7944649
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    |||||||||||||| ||||  || ||||||||||||||||||||||||    
T  7944696 ttttaggcctattaaaattgtgtcctcttgcttttggtgttaggtggg 7944649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 11290113 - 11290159
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||||| ||| || ||||||||||| ||||||||    
T  11290113 ttttaggcctattagaattgggtcctgttgcttttggtattaggtgg 11290159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 15078689 - 15078734
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  15078689 ttttaggcctgttagaattgggtcctcttacttttggtgttaggtg 15078734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 37430277 - 37430236
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||| ||| | ||||||||||||||||||||||||    
T  37430277 ttttggtgttacgtgagggttcctcatgtatacggtagtcat 37430236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 47985218 - 47985047
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||| |||    
T  47985218 tcagtcatgggcctcaatttttttttaatacccactagtattactgccctccaattttttttaatatccccagccattttctgtccccttgttttagtct 47985119  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  47985118 tttaggcctattagaattaggtcctcttgctttttgtgttaggtgggggttcctcatgtatacggtggtcat 47985047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 24525912 - 24525762
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattagg 330  Q
    ||||||||||||||||||| |||||||||||||        ||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||    
T  24525912 tttttaatacccactagtactactgccctccaattttttttaatacccccagccattttctgcccccttgttttagccttttaggcatattagaattagg 24525813  T
Q  331 ttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24525812 tcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 24525762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 220 - 381
Target Start/End: Complemental strand, 38415114 - 38414953
Alignment:
Q  220 gcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggccta 319  Q
    ||||||| || |||||||||||||||||||||| ||||||||||        ||||||| |||||||||||| | ||||||||||| |||||||||||||    
T  38415114 gcctcaaattttttttaatacccactagtattattgccctccaattttttttaataccctcagccattttctattcccttgttttagtcttttaggccta 38415015  T
Q  320 ttagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  38415014 ttagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacagtagtcat 38414953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 10329659 - 10329487
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||| |||||||||||||| |||||||||||||        |||||||||||||||||| |||||||||||||||  |    
T  10329659 tcagtcatgggcctcaattttttttttaatacccactagtactactgccctccaatattttttaatacccccagccattttttgtccccttgttttagcc 10329560  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  10329559 ttttacgcctattagaattaggtcctcttgcttttggtgttaagtgggggtttctcatgtatacggtagtcat 10329487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 19691958 - 19692111
Alignment:
Q  220 gcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggccta 319  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||         |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  19691958 gcctcaatttttttttaataccaactagtattactgtcctccatttttttttaatacccccaaccattttctgtccccttgttttagtcttttaggccta 19692057  T
Q  320 ttagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacg 373  Q
    |||||||||||| |||||||||||||||||||| | | ||||||||||||||||    
T  19692058 ttagaattaggtcctcttgcttttggtgttaggcgagggttcctcatgtatacg 19692111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 20091530 - 20091358
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| |||||||||||||| |||| |||||||||||||         |||||||||| ||||||| ||| |||||||||||  |    
T  20091530 tcagtcatgggcctcaatttttttttaatacccaccagtactactgccctccaatttttttttaatacccccaaccattttatgtacccttgttttagcc 20091431  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  20091430 ttttaggcctattagaattaggtcctcttacttttggtgttaggtgggggttcctcatgtatacggtagtcat 20091358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 23551299 - 23551148
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattag 329  Q
    ||||||||||||||||||| |||||||||||||         |||||||| ||||||||| |||||||||||||||   |||||||||||||||||||||    
T  23551299 tttttaatacccactagtactactgccctccaaaaaaaatttaatacccctagccattttttgtccccttgttttagctttttaggcctattagaattag 23551200  T
Q  330 gttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23551199 gtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 23551148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 210 - 378
Target Start/End: Complemental strand, 48984093 - 48983924
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||||||         |||||||||| ||||||| ||| |||||||||||  |    
T  48984093 tcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaatttttttttaatacccccaaccattttttgtacccttgttttagcc 48983994  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagt 378  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||    
T  48983993 ttttaggcctattagaattaagtcctcttacttttggtgttaggtgggggttcctcatgtatacggtagt 48983924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 25010371 - 25010458
Alignment:
Q  294 ccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25010371 ccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 25010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 8239560 - 8239712
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattagg 330  Q
    ||||||||||||| ||||| || ||||||| ||        |||||||||| ||||||  |||||||||||||||  |||||||||||||||||||||||    
T  8239560 tttttaatacccattagtactaatgccctctaattttttttaatacccccaaccatttgttgtccccttgttttagccttttaggcctattagaattagg 8239659  T
Q  331 ttctcttgcttttggtgttaggtg--ggagttcctcatgtatacggtagtcat 381  Q
    | |||||||||||||||||| |||  || ||||||||| ||||||||| ||||    
T  8239660 tcctcttgcttttggtgttaagtggaggggttcctcatatatacggtaatcat 8239712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 8171706 - 8171616
Alignment:
Q  291 tgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||| |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  8171706 tgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 8171616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 18776917 - 18776843
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  18776917 tcttttaggattattagaattagttcctcttgtttttggtgttaggtgggggtttctcatgtatacggtagtcat 18776843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 29077184 - 29077245
Alignment:
Q  320 ttagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  29077184 ttagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 29077245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 17800394 - 17800348
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  17800394 ttttaggcctattagaattgggtcctcttgcttttggtgttaggtgg 17800348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 10955468 - 10955509
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10955468 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 10955509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 25010303 - 25010356
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaa 263  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||||||    
T  25010303 tcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaa 25010356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 23859002 - 23859049
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  23859002 ttttaggcctattagaattgggtcctcttgcatttggtgttaggtggg 23859049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 7398380 - 7398426
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  7398380 ttttaggcctattagaattgggtcctcttgcttttggtgttacgtgg 7398426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 12596405 - 12596364
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  12596405 ttttggtgttaggtgggggttcctcatgcatacggtagtcat 12596364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 26917855 - 26917810
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||| |||||||||| |||  |||||||||||||||||||||    
T  26917855 ttttaggcttattagaattgggtcttcttgcttttggtgttaggtg 26917810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 27237596 - 27237551
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  27237596 ttttaggcctattagaattgggtcatcttgcttatggtgttaggtg 27237551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 12419670 - 12419623
Alignment:
Q  309 ttttaggcctatta--gaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  12419670 ttttaggcctattatagaattgggtcctcttgcttttggtgttaggtg 12419623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 26715981 - 26716152
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||| |||        |||||||||||||||||| ||||||||||||||| |||    
T  26715981 tcagtcatgggcctcaatttttttttaatacccactagtattactgcccttcaattttttttaatacccccagccattttatgtccccttgttttagtct 26716080  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  26716081 tttagacctattagaattaggttctcttgctttttgtgttaggtgggggttcctcatgtatacggtagtcat 26716152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 9045882 - 9046053
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | |||||||||| ||||||||||||| |||||||||||||||||||        |||||||||||| ||||| ||||||||||||||| |||    
T  9045882 tcagtcatgggcctcaatttttttttaatacccattagtattactgccctccaattttttttaatacccccagctattttatgtccccttgttttagtct 9045981  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  9045982 tttaggcttattagaattaggtcctcttgctttttgtgttaggtgggggttcctcatgtatacggtagtcat 9046053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 10762793 - 10762643
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattagg 330  Q
    ||||||||||||||| ||| ||||| |||||||        ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  10762793 tttttaatacccactggtactactgtcctccaattgtttttaataccctcagccattttctgtccccttgttttagccttttaggcctattagaattagg 10762694  T
Q  331 ttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    | ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10762693 tcctcttgcatttggtgttaggtgggggttcctcatgtatacggtagtcat 10762643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 27506991 - 27506818
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| ||||| |||||||| ||||| |||||||||||||         ||||||||||||||||||||||| ||||||||||      
T  27506991 tcagtcatgggcctcaattttttttttaatacccattagtactactgccctccaaaaaaaatttaatacccccagccattttctgtctccttgttttagc 27506892  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27506891 cttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggagttcctcatgtatacagtagtcat 27506818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 362
Target Start/End: Original strand, 8327517 - 8327671
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccc-cagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||||||         |||||||| ||||||||||||||||||||||||||      
T  8327517 tcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaatttttttttaataccccccagccattttctgtccccttgttttagc 8327616  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcc 362  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  8327617 cttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcc 8327671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 24410286 - 24410461
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtcccc-ttgttttaa 306  Q
    ||||||| | |||||||||| ||||||||||||| ||||| |||| ||||||||          |||||||||||| ||||||||||||| ||||||||     
T  24410286 tcagtcatgggcctcaatttttttttaatacccattagtactactaccctccaattttttttttaatacccccagctattttctgtcccccttgttttag 24410385  T
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggt-gggagttcctcatgtatacggtagtcat 381  Q
     |||||||||| ||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  24410386 ccttttaggccaattagaattaggtcctcttgtttttggtgttaggtggggggttcctcatgtatacggtagtcat 24410461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 29940037 - 29939940
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  29940037 cattttctgtcctcttgttttaaccttttaggtctattagaattagttcctcttgcttttggtgttaggtggtggttcctcatgtatacggtagtcat 29939940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 3155167 - 3155241
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  3155167 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 3155241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 4505844 - 4505918
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  4505844 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 4505918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 12337600 - 12337526
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  12337600 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 12337526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 6964968 - 6965031
Alignment:
Q  318 tattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6964968 tattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 6965031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 8907231 - 8907157
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||  | |||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  8907231 tcttttaggattattagaattaattcctcttgattttggtgttaggtgggggtttctcatgtatacggtagtcat 8907157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 12134214 - 12134169
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  12134214 ttttaggcctattagaattgagttctcttgcttttggtgttaggtg 12134169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 24035719 - 24035672
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  24035719 ttttaggtctattagaattaggtcctcttgcttttagtgttaggtggg 24035672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 29694312 - 29694359
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  29694312 ttttagacctattagaattgggtcctcttgcttttggtgttaggtggg 29694359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 37182598 - 37182645
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||| |||  ||||||||||| |||||||||||    
T  37182598 ttttaggcctattagaattgggtcatcttgcttttgctgttaggtggg 37182645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 38400726 - 38400773
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||  |||  |||||||||||||||||||||||    
T  38400726 ttttaggcctattagaatagggtcatcttgcttttggtgttaggtggg 38400773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 3952989 - 3953030
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| |||||||||| |||||||| ||||    
T  3952989 ttttggtgttaggtgggggttcctcatgcatacggtaatcat 3953030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 7162767 - 7162808
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||| || ||||||||| ||||||||||||||    
T  7162767 ttttggtgttaggtaggggttcctcatatatacggtagtcat 7162808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 11912932 - 11912887
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||||||| |||  ||||| |||||||||||||||    
T  11912932 ttttaggcctattagaattgggtcatcttgattttggtgttaggtg 11912887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 10252335 - 10252375
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgtt 349  Q
    ||||||||||||||||||| |||  ||||||||||||||||    
T  10252335 ttttaggcctattagaattgggtcatcttgcttttggtgtt 10252375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 13800718 - 13800674
Alignment:
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||||||||||||| | |  |||||||||||||||||||||    
T  13800718 tttaggcctattagaattggatcttcttgcttttggtgttaggtg 13800674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 9173271 - 9173100
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | |||||||||| |||||||||||||||||||||| ||||||||||        |||| ||||||||||||||||||||||||||||| |||    
T  9173271 tcagtcatgggcctcaatttttttttaatacccactagtattattgccctccaattttttttaatatccccagccattttctgtccccttgttttagtct 9173172  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  9173171 tttaggcctattagaattaggtcctcttacttttggtgttaggtgggggttcctcatgtatacggtagtcat 9173100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 1367104 - 1366955
Alignment:
Q  232 ttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggt 331  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1367104 ttttaatacccactagtattactgccctccaaaattttttaatacccccagccattttctgtccccttgttttagtcttttaggcctattagaattaggt 1367005  T
Q  332 tctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
      ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1367004 catcttgcttttggtgttaggtgggggttcctcgtgtatacggtagtcat 1366955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 19955581 - 19955753
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnna-atacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||||||||||||||||| | |||||||||||          |||||||||||||||||||||||||||||||||  |    
T  19955581 tcagtcatgggcctcaatttttttttaatacccactagtactgctgccctccaaaaaaaaaattatacccccagccattttctgtccccttgttttagcc 19955680  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  19955681 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatatatacggtagtcat 19955753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 17168819 - 17168992
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn---aatacccccagccattttctgtccccttgttttaa 306  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||||     
T  17168819 tcagtcatgggcctcaattt-tttttaatacccactagtactactgccctccaattttcttttttaatacccccagccattttctgtccccttgttttag 17168917  T
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
     ||||||||||||||||||||||||  |||||||||||||||||||| || |||||||||||||| |||||||||    
T  17168918 ccttttaggcctattagaattaggtcttcttgcttttggtgttaggtaggggttcctcatgtatatggtagtcat 17168992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 13913732 - 13913559
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| ||||||||||||||||||| ||||||||| |||          |||||||||| |||||||||||||| ||||||||      
T  13913732 tcagtcatgggcctcaatttttttttaatacccactagtactactgcccttcaattttttttttaatacccccaaccattttctgtcccattgttttagc 13913633  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  13913632 cttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggtttctcatgtatacggtagtcat 13913559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 27559564 - 27559673
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||    
T  27559564 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttacttatggtgttaggtgggggttcctcatgtata 27559663  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  27559664 cggtagtcat 27559673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 44895539 - 44895688
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattagg 330  Q
    ||||||||| ||||||||| ||||| |||||||        |||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  44895539 tttttaatatccactagtactactgtcctccaattttttttaatacccc-agccattttctgtccctttgttttagccttttaggcctattagaattagg 44895637  T
Q  331 ttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    | |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  44895638 tcctcttgcttttggtgttaggtgggggttcctcatgtatacggtaatcat 44895688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 40502040 - 40501867
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| ||||| |||||||||||||| |||||||||| ||         ||||||||||||||||||||||||||||||||||      
T  40502040 tcagtcatgggcctcaattttttttttaatacccactagtactactgccctctaaattttttttaatacccccagccattttctgtccccttgttttagc 40501941  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||||  |||| |||||||||||||||||||    
T  40501940 cttttaggtctattagaattagatcatcttgcttttggtgttaggtggaggttcttcatgtatacggtagtcat 40501867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 23185366 - 23185463
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23185366 cattttctgtcctcttgttttagccttttaggcctattagaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 23185463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 4971792 - 4971695
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||| ||||| |||||||||  |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4971792 cattttttgtcctcttgttttagccttttaggcctattagaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 4971695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 9181155 - 9181082
Alignment:
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9181155 cttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 9181082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 51607624 - 51607517
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    |||||||||||| ||||||||| ||||| |||||  ||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||    
T  51607624 aatacccccagc-attttctgttccctt-ttttagccttttaggcctattagaattatgtcctcttgcttttggtattagatgggagttcctcatgtata 51607527  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  51607526 cggtagtcat 51607517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 5316626 - 5316716
Alignment:
Q  291 tgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||| |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  5316626 tgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 5316716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 27906868 - 27906794
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  27906868 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 27906794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 44655703 - 44655777
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  44655703 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 44655777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 50881369 - 50881466
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| | |||||  ||||||||||||||||  ||||||||||||||| ||||||||    
T  50881369 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttaattttggtgttaggtggaggttcctcatgtatactgtagtcat 50881466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 3406413 - 3406454
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3406413 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 3406454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 3440407 - 3440366
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3440407 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 3440366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 5027528 - 5027585
Alignment:
Q  324 aattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||| | |||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  5027528 aattagttcctcttgcttttggtgttaggtgggggttcctcatctatatggtagtcat 5027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 14146295 - 14146336
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  14146295 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 14146336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 41697255 - 41697214
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  41697255 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 41697214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 39134896 - 39134849
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  39134896 ttttaagcctattagaattgggtcctcttgcttttggtgttaggtggg 39134849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 5533251 - 5533302
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagtt 360  Q
    ||||| ||||||||||||| | | |||||||||||| |||||||||||||||    
T  5533251 ttttacgcctattagaattggatcctcttgcttttgatgttaggtgggagtt 5533302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 6771786 - 6771827
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||  ||||||| ||||||||||||||||    
T  6771786 ttttggtgttaggtggaggttcctcgtgtatacggtagtcat 6771827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 16140050 - 16140091
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||| ||||||||||||  |||||||||||||||||||||||    
T  16140050 ttttagtgttaggtggggattcctcatgtatacggtagtcat 16140091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 26803889 - 26803934
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||| ||||||||||||  ||| |||||||||||||||||||||    
T  26803889 ttttagtcctattagaattgagttatcttgcttttggtgttaggtg 26803934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 38547207 - 38547162
Alignment:
Q  311 ttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||| ||| ||||| ||||| ||||||||||||    
T  38547207 ttaggcctattagaatttggtcctcttacttttagtgttaggtggg 38547162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 220 - 381
Target Start/End: Original strand, 19498373 - 19498534
Alignment:
Q  220 gcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggccta 319  Q
    |||||||||| ||||||||||||||||||| |||||||||||||        |||||||||||||||| |||||||||||||||||  ||||||||||||    
T  19498373 gcctcaatttttttttaatacccactagtactactgccctccaattttttttaatacccccagccattatctgtccccttgttttagccttttaggccta 19498472  T
Q  320 ttagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  19498473 ttagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacagtagtcat 19498534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 212 - 381
Target Start/End: Complemental strand, 16882641 - 16882472
Alignment:
Q  212 agtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttt 311  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||  ||||    
T  16882641 agtcatgagcctcaatttttttttaatacccactagtattactgccctccaattttttttaatacccccagctattttctgtccccttgttttagccttt 16882542  T
Q  312 taggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||| |||  |||||||||||||    
T  16882541 taggcctattagaattaggtcctcttgcttttggtgttaggtgagggttccccatacatacggtagtcat 16882472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 40089374 - 40089546
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||||||||||||||||| || ||||||||||         ||||||| ||||||||||||||||||||||||||  |    
T  40089374 tcagtcatgggcctcaatttttttttaatacccactagtactagtgccctccaatttttttttaataccctcagccattttctgtccccttgttttagcc 40089473  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40089474 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 40089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 32128464 - 32128614
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattagg 330  Q
    ||||||||||||||||||||||||| |||||||        |||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  32128464 tttttaatacccactagtattactgtcctccaattttttttaatacccccagccattttatgtccccttgtttcagtcttttaggcctattagaattagg 32128563  T
Q  331 ttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    | |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  32128564 tcctcttgcttttggtgttaggtgggggtttcttatgtatacggtagtcat 32128614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 24969292 - 24969467
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnn---aatacccccagccattttctgtccccttgtttta 305  Q
    ||||||| | |||||||||| ||||| |||||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||||    
T  24969292 tcagtcatgggcctcaattttttttttaatacccactagtactactgccctccaatttttttttttaatacccccagccattttctgtccccttgtttta 24969391  T
Q  306 atcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
      |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24969392 gccttttaggcctattagaattagatcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 24969467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 16844877 - 16845051
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt--aatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaa 306  Q
    ||||||| | |||||||||| |||||  |||||||||||||||||||| |||||||         |||||||||  |||||||||||||||||||||||     
T  16844877 tcagtcatgggcctcaattttttttttaaatacccactagtattactgtcctccaatttttttttaatacccccgaccattttctgtccccttgttttag 16844976  T
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16844977 tcttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 16845051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 34027500 - 34027609
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34027500 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtata 34027599  T
Q  372 cggtagtcat 381  Q
    | ||||||||    
T  34027600 ccgtagtcat 34027609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 241 - 381
Target Start/End: Complemental strand, 43455746 - 43455608
Alignment:
Q  241 ccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgct 340  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||    
T  43455746 ccactagtattactgccctccaatttttt--aatacccccagccattttctgtccccttgttttagtcttttaggcctatttgaattaggtcctcttact 43455649  T
Q  341 tttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    || ||||||||||||| ||||||||||||||||||||||||    
T  43455648 ttcggtgttaggtgggggttcctcatgtatacggtagtcat 43455608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 38352441 - 38352332
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |    
T  38352441 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtaca 38352342  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  38352341 cggtagtcat 38352332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 223 - 381
Target Start/End: Complemental strand, 2790977 - 2790818
Alignment:
Q  223 tcaatttgttttt-aatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctatt 321  Q
    ||||||| ||||| || ||||||||||||||||| ||| |||        |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  2790977 tcaatttttttttgaaaacccactagtattactgtccttcaattatttttaatacccccagccattttatgtccccttgttttagtcttttaggcctatt 2790878  T
Q  322 agaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||| ||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  2790877 agaattaggtcctcttgcttttgccattaggtgggggttcctcatgtatacggtagtcat 2790818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 54083428 - 54083319
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    |||||||| |||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  54083428 aatacccctagccattttctgtctccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtaggggttcctcatgtata 54083329  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  54083328 cggtagtcat 54083319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 37777452 - 37777300
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaatta 328  Q
    ||||||||||||||||||| |||||||||||||          |||||| ||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  37777452 tttttaatacccactagtactactgccctccaattttttttttaatacctccagctattttctgtccccttgttttagccttttaggcctattagaatta 37777353  T
Q  329 ggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||  |||||||||||||||||| || | ||||||||||||||||||||||||    
T  37777352 ggtcatcttgcttttggtgttagttgagggttcctcatgtatacggtagtcat 37777300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 35465040 - 35465134
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagt 378  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||||  | |||||||||||||||||||||  ||||||||||||||||||||    
T  35465040 cattttctgtcctcttgttttagccttttaggcctattagaattaggtcatgttgcttttggtgttaggtggggattcctcatgtatacggtagt 35465134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 47128920 - 47129017
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  47128920 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 47129017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 10978833 - 10978930
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||| | |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  10978833 cattttctgttctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 10978930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 23509972 - 23509875
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  23509972 cattttctgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtctacggtagtcat 23509875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 10428379 - 10428282
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  ||||| |||||| | |||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  10428379 cattttctgtcctcttgttttagccttttaggattattataattagttcctcttgattttggtgttaggtggaggttcctcatgtatacggtagtcat 10428282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 13460140 - 13460237
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||  |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| |||||| |||||||||||||||||    
T  13460140 cattttctgtcttcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttccttatgtatacggtagtcat 13460237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 35779499 - 35779402
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||| || |||||||||  |||||||||||||||||||||| | |||||||||||| |||||||||   ||||||||||||||||||| ||||    
T  35779499 cattttctgccctcttgttttagccttttaggcctattagaattagttcctcttgcttttgatgttaggtgaaggttcctcatgtatacggtaatcat 35779402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 34768741 - 34768651
Alignment:
Q  291 tgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||| |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  34768741 tgtcctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtaatcat 34768651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 38209742 - 38209668
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  38209742 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 38209668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 55255225 - 55255299
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  55255225 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 55255299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 48209173 - 48209270
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||| ||||  |||||||||||| |  ||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  48209173 cattttctgtcctcttgttttagccttataggattattagaattagttcttcttgattttggtgttaggtgggggtttctcatgtatacggtagtcat 48209270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 36118632 - 36118584
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  36118632 tcttttaggcctattagaattgggtcatcttgcttttggtgttaggtgg 36118584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 37746894 - 37746847
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||    
T  37746894 ttttaggcctattagaattgggtcatcttgcttttggtgttaggtggg 37746847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 5128960 - 5128919
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  5128960 ttttggtgttaggtggaggttcctcatgtatacggtagtcat 5128919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 32915374 - 32915415
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  32915374 ttttggtgttaggtgggggttcctcatgtatacggtaatcat 32915415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 2135491 - 2135447
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggt 353  Q
    |||||||| |||||||||| ||| |||||||||||||||||||||    
T  2135491 ttttaggcttattagaattgggtcctcttgcttttggtgttaggt 2135447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 54780771 - 54780807
Alignment:
Q  345 gtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| ||||||||||||||||||||||||    
T  54780771 gtgttaggtgggggttcctcatgtatacggtagtcat 54780807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 39329565 - 39329518
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  39329565 ttttaggcctattagaatttggtcttcttgcttttggtgttatgtggg 39329518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 15735030 - 15735076
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    |||||||||| |||||||| |||  ||||||||||||||||||||||    
T  15735030 ttttaggcctgttagaattgggtcttcttgcttttggtgttaggtgg 15735076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 30507245 - 30507199
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    |||||||||||| ||||||  || |||||||||||||||||||||||    
T  30507245 ttttaggcctataagaattgagtcctcttgcttttggtgttaggtgg 30507199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 1105521 - 1105562
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||| |||||||||| |||||||||    
T  1105521 ttttggtgttaggtgggggttgctcatgtatatggtagtcat 1105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 36178607 - 36178652
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  36178607 ttttaggcccattagaatcgggtcctcttgcttttggtgttaggtg 36178652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 37514648 - 37514689
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  37514648 ttttggtgttaggtggggattcttcatgtatacggtagtcat 37514689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 40217164 - 40217209
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||||||| |||  | |||||||||||||||||||    
T  40217164 ttttaggcctattagaattgggtcattttgcttttggtgttaggtg 40217209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 43207490 - 43207315
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnn---aatacccccagccattttctgtccccttgtttta 305  Q
    ||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||    
T  43207490 tcagtcatgggcctcaattttttttttaatacccactagtattactgccctccaatttttttttttaatacccccagccattttctgtccccttgtttta 43207391  T
Q  306 atcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43207390 gtcttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 43207315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 53507133 - 53506962
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||||||        |||||||||| ||||||| |||||||||||||||  ||    
T  53507133 tcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaattttttttaatacccccaaccattttatgtccccttgttttagcct 53507034  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  53507033 tttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggtttctcatgtatacggtagtcat 53506962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 220 - 381
Target Start/End: Complemental strand, 9878925 - 9878765
Alignment:
Q  220 gcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggccta 319  Q
    |||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||    
T  9878925 gcctcaattt-tttttaatacccactagtattactgccctccaattttttttaatacccccagccattttctgtccccttgttttagtcttttaggccta 9878827  T
Q  320 ttagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| ||||||||||||| ||||| |||| |||||| ||||||||| |||||||    
T  9878826 ttagaattaggtcctcttgcttttggcgttagatgggggttccttatgtatacgatagtcat 9878765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 50939484 - 50939311
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| |||||||||||||| |||| |||||||||||||          |||| |||||||||||||||||| |||||||||| |    
T  50939484 tcagtcatgggcctcaatttttttttaatacccaccagtactactgccctccaattttttttttaataaccccagccattttctgtctccttgttttagt 50939385  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  50939384 cttttaggcctattagaattaggtccttttgcttttggtgttaggcgggggttcctcatgtatacggtagtcat 50939311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 37168223 - 37168395
Alignment:
Q  211 cagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtccccttgttttaatc 308  Q
    |||||| | |||| ||||| ||||||||||||||||||| |||||||||||||          |||||||||||| ||||| |||||||||||||||  |    
T  37168223 cagtcatgggccttaatttttttttaatacccactagtactactgccctccaattttttttttaatacccccagctattttatgtccccttgttttagcc 37168322  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37168323 ttttaggcctattataattaggtcctcttgcttttagtgttaggtgggagttcctcatgtatacggtagtcat 37168395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 44708396 - 44708505
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  44708396 aatacccccagccattttatgtccccttgttttagccttttaggcctattagaattaggtcatcttgcttttggtgttaggtgggggttcctcatgtata 44708495  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  44708496 cggtagtcat 44708505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 54407407 - 54407236
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||||||||| ||||||| |||||||||||||         |||||||||||| ||||||||||||||| |||||  |    
T  54407407 tcagtcatgggcctcaatttttttttaatacctactagtactactgccctccaatttttttttaatacccccagctattttctgtccccttcttttagcc 54407308  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||    
T  54407307 ttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttact-atgtatacggtagtcat 54407236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 34290823 - 34290714
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    |||||||||| ||||||| |||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||    
T  34290823 aatacccccaaccattttatgtccccttgttttagccttttaggcctattagaattaggtcctcttgtttttggtgttaggtgggggttcctcatatata 34290724  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  34290723 cggtagtcat 34290714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 48157015 - 48157167
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaatta 328  Q
    |||||||||||||||||||||| ||||||||||          ||||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||    
T  48157015 tttttaatacccactagtattaatgccctccaattttttttttaatacccccagccattttctgtccccttgttttagccttttaagcctactagaatta 48157114  T
Q  329 ggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
     || |||||||||||| ||||| ||||| ||||||||||||||| ||||||||    
T  48157115 cgtcctcttgcttttgatgttaagtgggggttcctcatgtatacagtagtcat 48157167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 8073512 - 8073416
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||| ||||| |||||||||  |||||||||||||||||||||| | || ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  8073512 cattttatgtcctcttgttttagccttttaggcctattagaattagttcctattgcttttggtgttatgtggg-gttcctcatgtatacggtagtcat 8073416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 3954071 - 3953980
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggt 375  Q
    |||||||||| | |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||    
T  3954071 cattttctgttctcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggt 3953980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 54619355 - 54619281
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  54619355 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 54619281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 38681245 - 38681171
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| |||||||||||||||||  |||||||||||||||||||||||    
T  38681245 tcttttaggattattagaattagttcctcttgattttggtgttaggtggggtttcctcatgtatacggtagtcat 38681171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 29620540 - 29620466
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  ||||| |||||| | |||||| || |||||||||||||| ||||||||||||||||||||||||    
T  29620540 tcttttaggattattaaaattagttcctcttgattgtggtgttaggtgggggttcctcatgtatacggtagtcat 29620466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 18372434 - 18372507
Alignment:
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||  |||||||||||| | |||||| |||||||||||| ||||  |||||||||||||||||||||||    
T  18372434 cttttaggattattagaattagttcctcttgattttggtgttagatggggattcctcatgtatacggtagtcat 18372507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 8420258 - 8420305
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  8420258 ttttaggcatattagaattgggttctcttgcttttggtgttaggtggg 8420305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 27078721 - 27078647
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| |  ||||| |||||||||||||| || ||| ||||||||||||||||||||    
T  27078721 tcttttaggattattagaattagttcatcttgattttggtgttaggtaggggtttctcatgtatacggtagtcat 27078647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 27084518 - 27084444
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| |  ||||| |||||||||||||| || ||| ||||||||||||||||||||    
T  27084518 tcttttaggattattagaattagttcatcttgattttggtgttaggtaggggtttctcatgtatacggtagtcat 27084444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 29598040 - 29598086
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  29598040 ttttaggcctattagaattaggtcatcttgcttttggtgttaggtgg 29598086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 21582758 - 21582799
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  21582758 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 21582799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 47467671 - 47467712
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  47467671 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 47467712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 49393023 - 49393068
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  49393023 ttttaggcctattagaattaggtcctcttacttttggtgttaggtg 49393068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 53149433 - 53149392
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  53149433 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 53149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 36716177 - 36716109
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggt 375  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| || ||||| |||||||||    
T  36716177 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggtccctcacgtatacggt 36716109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 52374590 - 52374637
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||    
T  52374590 ttttaggcctattagaattgagtcctcttgcttttggtgttaggtggg 52374637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 42098788 - 42098829
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||| || || ||||||||||||||||||||||||    
T  42098788 ttttggtgttaagtaggggttcctcatgtatacggtagtcat 42098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 9e-52; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 38869609 - 38869438
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | ||||||| || ||||||||||||||||||||||||| | |||||        ||||||||||| |||||||||||||||||||||| |||    
T  38869609 tcagtcatgggcctcaaattttttttaatacccactagtattactgtcatccaattttttttaatacccccagtcattttctgtccccttgttttagtct 38869510  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  38869509 tttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggtttctcatgtatacggtagtcat 38869438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 16199042 - 16198869
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| ||||| ||||||||||| || |||||||||||||         ||||||||||||||||||||||||||||||||||      
T  16199042 tcagtcatgggcctcaattttttttttaatacccactaatactactgccctccaatttttttttaatacccccagccattttctgtccccttgttttagc 16198943  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16198942 cttttaggcctattagaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 16198869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 9364144 - 9364316
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||||||| ||||||||| |||||| ||||||         |||||||||||||||||| ||||||||||||||| ||    
T  9364144 tcagtcatgggcctcaatttttttttaatatccactagtactactgctctccaatttttttttaatacccccagccattttatgtccccttgttttagtc 9364243  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  9364244 ttttaggtctattagaattaggtcctcttgcttttgatgttaggtgggggttcctcatgtatacggtagtcat 9364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 27923935 - 27924107
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||||||         |||| ||||| |||||||||||| |||||||||| ||    
T  27923935 tcagtcatgggcctcaatttttttttaatacccactagtactactgccctccaatttttttttaatatccccaaccattttctgtctccttgttttagtc 27924034  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  27924035 ttttaggcctattagaattaggtccttttgcttttggtgttaggcgggcgttcctcatgtatacggtagtcat 27924107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 16799572 - 16799402
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatct 309  Q
    ||||||| | |||||||||| ||||||| ||||| |||||||||||||||||||        ||||||||||||| |||| ||||||||||||||| |||    
T  16799572 tcagtcatgggcctcaatttttttttaacacccattagtattactgccctccaactttttttaatacccccagccttttt-tgtccccttgttttagtct 16799474  T
Q  310 tttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  16799473 tttaggtctattagaattaggtcctcttgcttttggtgttatgtgggggttcctcatgtatacggtaatcat 16799402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 28822568 - 28822417
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnnaataccccc-agccattttctgtccccttgttttaatcttttaggcctattagaattag 329  Q
    |||||||||| ||||||||||||||||||||||        ||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  28822568 tttttaatacacactagtattactgccctccaattgtttttaataccccccaaccattttatgtccccttgttttagtcttttaggcctattagaattag 28822469  T
Q  330 gttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    || |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  28822468 gtcctcttgcttttggtgttaggtgggggttcatcatgtatacggtagtcat 28822417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 221 - 381
Target Start/End: Complemental strand, 40389770 - 40389611
Alignment:
Q  221 cctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctat 320  Q
    ||||||||| ||||||||||||||||||| || |||| |||||        ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  40389770 cctcaattt-tttttaatacccactagtactattgccatccaattgtttttaatacccccagccattttctgtccccttgttttagccttttaggcctat 40389672  T
Q  321 tagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||  |||||||||||||    
T  40389671 tagaattaggtcctcttgcttttagtgttaggtgggggttcctcataaatacggtagtcat 40389611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 7670840 - 7670949
Alignment:
Q  272 aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtata 371  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||  | |||||||||||    
T  7670840 aatacccccagccattttctgtccccttgttttagccttttaggcctattagaattaggtcctcttgcttttggtgttaggtggggatacctcatgtata 7670939  T
Q  372 cggtagtcat 381  Q
    ||||||||||    
T  7670940 cggtagtcat 7670949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 16592243 - 16592149
Alignment:
Q  287 tttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||  |||||||||  ||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  16592243 tttctgtcatcttgttttagccttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatatatacggtagtcat 16592149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 34756515 - 34756441
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  34756515 tcttttaggattattagaattagttcctcttgattttgttgttaggtgggggttcctcatgtatacggtagtcat 34756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 27078939 - 27079036
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  |||| ||||||| | ||||   ||||||||||||||||| ||||||||||||||| ||||||||    
T  27078939 cattttctgtcctcttgttttagccttttaggattattggaattagttcctctatattttggtgttaggtgggggttcctcatgtatacagtagtcat 27079036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 30854258 - 30854354
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||| ||||| |||||||||  ||||||||  |||||||||||| | |||||  ||||||||||||||||| |||||||||||||||| |||||||    
T  30854258 cattttatgtcctcttgttttagccttttaggattattagaattagttcctctta-ttttggtgttaggtgggggttcctcatgtatacgatagtcat 30854354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 2274874 - 2274915
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  2274874 ttttggtgttaggtgggggttcctcgtgtatacggtagtcat 2274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 15480205 - 15480164
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  15480205 ttttggtgttaggtgggggttcctcatgcatacggtagtcat 15480164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 15639575 - 15639620
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  15639575 ttttaggcctattagaattgggtcctcttacttttggtgttaggtg 15639620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 19523183 - 19523224
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  19523183 ttttggtgttaggtgggggttcctcatgtatatggtagtcat 19523224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 34425832 - 34425877
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  34425832 ttttaggcctattagaattgagtcctcttgcttttggtgttaggtg 34425877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 22648899 - 22648860
Alignment:
Q  316 cctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  22648899 cctattagaatttgattctcttgcttttggtgttaggtgg 22648860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 11242489 - 11242447
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttag 351  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||    
T  11242489 ttttatgcctattagaattgggtcctcttgcttttggtgttag 11242447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 2024811 - 2024766
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||| ||||||||||  || ||||||||||||||||||||||    
T  2024811 ttttaggcatattagaattgagtcctcttgcttttggtgttaggtg 2024766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 36187995 - 36187954
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||  ||| ||||||||||||||||||||    
T  36187995 ttttggtgttaggtggaggtttctcatgtatacggtagtcat 36187954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 7079561 - 7079605
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggt 353  Q
    |||||| ||||||||||||||||  ||||||||||| ||||||||    
T  7079561 ttttagacctattagaattaggtcatcttgcttttgatgttaggt 7079605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 40794496 - 40794452
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggt 353  Q
    |||||||| |||||||||| ||| ||||| |||||||||||||||    
T  40794496 ttttaggcttattagaattgggtcctcttacttttggtgttaggt 40794452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 225 - 381
Target Start/End: Complemental strand, 27788922 - 27788766
Alignment:
Q  225 aatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggcctattaga 324  Q
    ||||| |||||||||||||||||||||||||||||||||        |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |    
T  27788922 aatttttttttaatacccactagtattactgccctccaattttttttaatacccccaaccattttctgtccccttattttagtcttttaggcctattaaa 27788823  T
Q  325 attaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27788822 attaggtcatcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcat 27788766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 20711968 - 20711798
Alignment:
Q  210 tcagtcaagagcctcaatttgttttt-aatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatc 308  Q
    ||||||| | |||||||||| ||||| |||||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||    
T  20711968 tcagtcatgggcctcaattttttttttaatacccactagtattactgtcctccaatttttt--aatacccccagccattttctgtccccttgttttaatc 20711871  T
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||||||||||||||  ||||||||||  |||||| |||| ||||||||||||||||||||||||    
T  20711870 ttttaggcctattagaattaggtcatcttgcttttaatgttagatgggggttcctcatgtatacggtagtcat 20711798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 17353809 - 17353982
Alignment:
Q  210 tcagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnn--aatacccccagccattttctgtccccttgttttaat 307  Q
    ||||||| | |||||||||| ||||||||||||||||||| |||||||||| ||          ||||||||||||||||||||||||||||||||||      
T  17353809 tcagtcatgggcctcaatttttttttaatacccactagtactactgccctctaattttttttttaatacccccagccattttctgtccccttgttttagc 17353908  T
Q  308 cttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  17353909 cttttaggtctattagaattaggtcctcttgcttttggtgttaggtgggggttcatcatgtatacgatagtcat 17353982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 28075660 - 28075811
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattag 329  Q
    ||||||||||||||||||| ||||| |||||||         ||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||    
T  28075660 tttttaatacccactagtactactgtcctccaatttttttttaatacccccagccattttctgtctccttgttttagccttttatgcctattagaattag 28075759  T
Q  330 gttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    || |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  28075760 gtcctcttgtttttggtgttaggtgggggttcctcatgtatacggtagtcat 28075811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 381
Target Start/End: Original strand, 34397724 - 34397885
Alignment:
Q  220 gcctcaatttgtttttaatacccactagtattactgccctccaannnnnnnnaatacccccagccattttctgtccccttgttttaatcttttaggccta 319  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||        |||||||||| ||||||||||||| |||||||||  ||||||||||||    
T  34397724 gcctcaatttttttttaatacccactagtaatactgcccttcaattttttttaatacccccaaccattttctgtcctcttgttttagccttttaggccta 34397823  T
Q  320 ttagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||  ||||||||||||||||| ||||  ||||||||||| |||| |||||||    
T  34397824 ttagaattaggtcttcttgcttttggtgttaagtggaggttcctcatgtttacgatagtcat 34397885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 231 - 381
Target Start/End: Complemental strand, 235453 - 235304
Alignment:
Q  231 tttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatcttttaggcctattagaattag 329  Q
    ||||||||||||||||||| |||||||||||||         ||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||    
T  235453 tttttaatacccactagtactactgccctccaaattttttttaataccctcaaccattttctgtccc-ttgttttagtcttttaggcctattagaattag 235355  T
Q  330 gttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    || ||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  235354 gtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcat 235304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 19987032 - 19987184
Alignment:
Q  225 aatttgtttttaatacccactagtattactgccctccaannnnnnnn-aatacccccagccattttctgtccccttgttttaatcttttaggcctattag 323  Q
    ||||| ||||||||||||||||||| ||||||||| |||         ||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  19987032 aatttttttttaatacccactagtactactgcccttcaatttttttttaatacccccagccattttccgtccccttgttttagccttttaggcctattag 19987131  T
Q  324 aattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggta 376  Q
    ||||||||  |||||||||||||||||||||||  ||||| ||||||| ||||    
T  19987132 aattaggtcatcttgcttttggtgttaggtggggattccttatgtatatggta 19987184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 19737867 - 19737770
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||||||||  ||||||||  ||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  19737867 cattttctgtcctcttgttttagccttttaggattattaaaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 19737770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 21280499 - 21280573
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21280499 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggagttcctcatgtatacggtagtcat 21280573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 13727551 - 13727477
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  13727551 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 13727477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 21479448 - 21479522
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  21479448 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 21479522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 381
Target Start/End: Original strand, 33774071 - 33774145
Alignment:
Q  307 tcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||  |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  33774071 tcttttaggattattagaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 33774145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 24711118 - 24711077
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  24711118 ttttggtgttaggtgggggttcctcatgtatacggtagtcat 24711077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 30832643 - 30832602
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  30832643 ttttggtgttaggtgggggttcctcatgcatacggtagtcat 30832602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 106459 - 106563
Alignment:
Q  277 ccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggta 376  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  106459 ccccagccattttatgtccccttgttttagtcttttaggcctattagatttaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggta 106558  T
Q  377 gtcat 381  Q
    |||||    
T  106559 gtcat 106563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 381
Target Start/End: Original strand, 1271 - 1368
Alignment:
Q  284 cattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||| ||||| |||||||||| ||||||||  ||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  1271 cattttttgtcctcttgttttaaccttttaggattattaaaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcat 1368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 4200 - 4252
Alignment:
Q  211 cagtcaagagcctcaatttgtttttaatacccactagtattactgccctccaa 263  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||||||||    
T  4200 cagtcatgggcctcaatttttttttaatacccactagtactactgccctccaa 4252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 231033 - 230986
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtggg 356  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  231033 ttttaggcctattagaatcgggtcctcttgcttttggtgttaggtggg 230986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 40012 - 40058
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  40012 ttttaggcctattagaattgggtcctcttgctttttgtgttaggtgg 40058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 355
Target Start/End: Original strand, 138072 - 138118
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtgg 355  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  138072 ttttaggcctattagaattgggtcctcttgctttttgtgttaggtgg 138118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 181903 - 181944
Alignment:
Q  340 ttttggtgttaggtgggagttcctcatgtatacggtagtcat 381  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  181903 ttttggtgttagatgggggttcctcatgtatacggtagtcat 181944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 23803 - 23908
Alignment:
Q  275 acccccagccattttctgtccccttgttttaatcttttaggcctattagaattaggttctcttgcttttggtgttaggtgggagttcctcatgtatacgg 374  Q
    ||||||||||||||| ||||||| |||||   | ||||||||||| ||||| |||||| | |||| ||| |||| | ||||| ||| ||  |||||||||    
T  23803 acccccagccattttttgtccccctgtttatgttttttaggcctaatagaaataggttat-ttgccttttgtgtaaagtgggggtttcttgtgtatacgg 23901  T
Q  375 tagtcat 381  Q
    |||||||    
T  23902 tagtcat 23908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 1285 - 1330
Alignment:
Q  309 ttttaggcctattagaattaggttctcttgcttttggtgttaggtg 354  Q
    |||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  1285 ttttaggcctgttagaattgggtcctcttacttttggtgttaggtg 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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