View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_high_9 (Length: 328)
Name: NF1536_high_9
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 26616269 - 26616560
Alignment:
| Q |
18 |
gataaaaataccctaacatttcttatttaaaaccaaatatagatgaagggaaattacgtaaatcacaatatgattcaacatttaatttttgttctagctc |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616269 |
gataaaaataccctaacatttcttatttaaaaacaaatatagatgaagggaaattacgtaaatcacaatatgattcaacatttaatttttgttctagctc |
26616368 |
T |
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| Q |
118 |
ttctcccatgtcaatannnnnnnncctcaacaagtatttcaacaaacgacgcaccaccatcgccaataacgattgacgcatcctcctccaccataaccca |
217 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616369 |
ttctcccatgtcaatattttttt-cctcgacaagtatttcaacaaacgacgcaccaccatcgccaataacgattgacgcatcctcctccaccataaccca |
26616467 |
T |
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| Q |
218 |
acaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttacatttcaaagtctgagaaaccccaattttgttttcctgtac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26616468 |
acaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttacatgtcaaagtctgagaaaccccaattttgttttcctgtac |
26616560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 26722197 - 26722488
Alignment:
| Q |
18 |
gataaaaataccctaacatttcttatttaaaaccaaatatagatgaagggaaattacgtaaatcacaatatgattcaacatttaatttttgttctagctc |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722197 |
gataaaaataccctaacatttcttatttaaaaacaaatatagatgaagggaaattacgtaaatcacaatatgattcaacatttaatttttgttctagctc |
26722296 |
T |
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| Q |
118 |
ttctcccatgtcaatannnnnnnncctcaacaagtatttcaacaaacgacgcaccaccatcgccaataacgattgacgcatcctcctccaccataaccca |
217 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26722297 |
ttctcccatgtcaatattttttt-cctcgacaagtatttcaacaaacgacgcaccaccatcgccaataacgattgacgcatcctcctccaccataaccca |
26722395 |
T |
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| Q |
218 |
acaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttacatttcaaagtctgagaaaccccaattttgttttcctgtac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26722396 |
acaacacaacctttgtcaaaaacgaaattcgcagtgtgtttgatttcagttacatgtcaaagtctgagaaaccccaattttgttttcctgtac |
26722488 |
T |
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