View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_low_1 (Length: 608)
Name: NF1536_low_1
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 1235605 - 1235946
Alignment:
| Q |
18 |
gatggaactacgcaaatttatacaaattaattcaccctctcaactcaatattcggggttgattgaacttactgtacattatttggtctagcacaactctt |
117 |
Q |
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| T |
1235605 |
gatggaactacgcaaatttatacaaatt----caccctctca-----atattcggggttgattgaacttactgtacattatttggtctagcacaactctt |
1235695 |
T |
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| Q |
118 |
tctagttcaattaacatagatactcgatcaaaccggatacatccgttatgtgtgtgttagattttaagtagtcattgttatttcgtctttatacatagaa |
217 |
Q |
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| T |
1235696 |
tctagttcaattaacatagatactcgatcaaaccggatacatccgttatgtgtatgttagattttaagtagtcattgttatttcgtctttatacatagaa |
1235795 |
T |
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| Q |
218 |
aaacattgagtttgtcatatttaaccactattatattggtctaaattcatgtttctaataatt---------------aaactttttcatcggattatag |
302 |
Q |
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| T |
1235796 |
aaacattgggtttgtcatatttaaccactattatattggtctaaattcatgtttctaataattaaacttcgagaggaaaaactttttcatcggattatag |
1235895 |
T |
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| Q |
303 |
aaaatatcttatgaggggaaattgattgatgcgcgagtctctcaacaataa |
353 |
Q |
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| T |
1235896 |
aaaatatcttatgaggggaaattgattgatgcgcgagtctctcaacaataa |
1235946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 350 - 608
Target Start/End: Original strand, 1235978 - 1236226
Alignment:
| Q |
350 |
ataagattattgagttcaattatgagtgaatata----gttataaagctaccatatagtgtattcattgataaagtgttttttatgacgcaattcattta |
445 |
Q |
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| T |
1235978 |
ataagattattgagttcaattatgagtgaatatatatagttataaagctaccatatagtgtattcattgataaagtgtttt-------------cattta |
1236064 |
T |
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| Q |
446 |
tagatttttggtacctatatcannnnnnnnnattacatgttatgaatactttggtggatgtgaatgtgtcctcatttttatcttcatcaatagaatggtc |
545 |
Q |
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| T |
1236065 |
tagattgttggtacctatatcatttttttttattacatgttatgaatactt-ggtggatgtgaacgtgtcttcatttttatcttcatcaatagaatggtc |
1236163 |
T |
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| Q |
546 |
ttccaacttctatgttcatcttaatcattgcaattagtggaacactaatgacattatcttaat |
608 |
Q |
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| T |
1236164 |
ttccaacttctatgtgcatcttaatcattgaaattagtggaacactaatgacattatcttaat |
1236226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 547
Target Start/End: Original strand, 1233304 - 1233369
Alignment:
| Q |
482 |
atgttatgaatactttggtggatgtgaatgtgtcctcatttttatcttcatcaatagaatggtctt |
547 |
Q |
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| T |
1233304 |
atgttatgaatactttggtggatgtgaatgtgtcctcatgtttatcttcttcagtagaatggtctt |
1233369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 1233137 - 1233185
Alignment:
| Q |
285 |
tttttcatcggattatagaaaatatcttatgaggggaaattgattgatg |
333 |
Q |
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| T |
1233137 |
tttttgataggattatagaaaatatcttatgaggggagattcattgatg |
1233185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 1233262 - 1233302
Alignment:
| Q |
362 |
agttcaattatgagtgaatatagttataaagctaccatata |
402 |
Q |
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| T |
1233262 |
agttcaattataagtgaatatagttataaagctatcatata |
1233302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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