View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_low_12 (Length: 306)
Name: NF1536_low_12
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 45601709 - 45601986
Alignment:
| Q |
19 |
atgttaaactagaaacgctgtcattttctccannnnnnngcatcgaaattctgtggtcacaaacattaagttatggtgtagcattttgaatttgatcgat |
118 |
Q |
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| T |
45601709 |
atgttaaactagaaacgctgtcattttctccatttttttgcatcgaaattatgtggtcacaaacattaagttatggtgtagcattttgaatttgatggat |
45601808 |
T |
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| Q |
119 |
aatggcgaagaaaacgctaatgagcgatcaacacgactggggaatttgtagaataaagtgaatgcaatgtgcacgataagttaatgggagtataagcaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45601809 |
aatggcgaagaaaacgctaatgagcgatcaacacgactggggaatttgtagaataaagtgaatgcaatgtgcacgataagttaatgggagtataagcaac |
45601908 |
T |
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| Q |
219 |
cactaagatagaacttcattatcattattgtccctttggaatggaataagtgtggcacatcaacagcaccaacctatg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45601909 |
cactaagatagaacttcattatcattattgtccctttggaatggaataagtgtggcacatcaacaacaccaacctatg |
45601986 |
T |
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