View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_low_13 (Length: 290)
Name: NF1536_low_13
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 142 - 281
Target Start/End: Complemental strand, 2458157 - 2458018
Alignment:
| Q |
142 |
atgatgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacat |
241 |
Q |
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| T |
2458157 |
atgatgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacat |
2458058 |
T |
|
| Q |
242 |
ccaatacgctttgtgtttctccaaacaacctgagtataat |
281 |
Q |
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| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaat |
2458018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 2462730 - 2462594
Alignment:
| Q |
148 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacatcca |
244 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| ||||||||||||||| |
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| T |
2462730 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2462631 |
T |
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| Q |
245 |
atacgctttgtgtttctccaaacaacctgagtataat |
281 |
Q |
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| ||| | || |||||||||||||||||| ||||||| |
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| T |
2462630 |
acacgttgtgagtttctccaaacaacctgggtataat |
2462594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 3063274 - 3063403
Alignment:
| Q |
155 |
tatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacatccaatacgct |
251 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| |||||||||||||||| ||| | |
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| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
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| Q |
252 |
ttgtgtttctccaaacaacctgagtataat |
281 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
3063374 |
gtgagtttctccaaacaacctgagtataat |
3063403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 167 - 281
Target Start/End: Complemental strand, 2474352 - 2474238
Alignment:
| Q |
167 |
ccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaatacgctttgtgtttctccaaa |
266 |
Q |
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|||| ||||||||| || || |||||||||||| |||||||||| |||||||||| |||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
2474352 |
ccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcacatccaatacgttttgtgtttctccaaa |
2474253 |
T |
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| Q |
267 |
caacctgagtataat |
281 |
Q |
| |
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| T |
2474252 |
ccacctgagtataat |
2474238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
| Q |
148 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaata |
247 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||| |
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| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcacatccaatc |
2470001 |
T |
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| Q |
248 |
cgctttgtgtttctccaaacaacctgagt |
276 |
Q |
| |
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|| | ||||||||||||||| |||||||| |
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| T |
2470000 |
cgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 2458281 - 2458214
Alignment:
| Q |
16 |
ttatatataacaatttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctgg |
83 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458281 |
ttatatataacaatttgagaagtatatatcatcatgatcgtaatgagtcgggaactcatttttcctgg |
2458214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 2466775 - 2466642
Alignment:
| Q |
148 |
cacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatta---catcttactttggcacatcca |
244 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
2466775 |
cacttagtatggcttttcaccaa---agttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
2466679 |
T |
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| Q |
245 |
atacgctttgtgtttctccaaacaacctgagtataat |
281 |
Q |
| |
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| ||| | || |||||||||||||||||| ||||||| |
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| T |
2466678 |
acacgttgtgagtttctccaaacaacctgggtataat |
2466642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 2471090 - 2471027
Alignment:
| Q |
182 |
ggtggatcgtaattgcaaataatgaatgtgcctccattattacatcttactttggcacatccaa |
245 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgccacatccaa |
2471027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 18016046 - 18015917
Alignment:
| Q |
155 |
tatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacatccaatacgct |
251 |
Q |
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|
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| |||||||||||||||| ||| | |
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| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
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| Q |
252 |
ttgtgtttctccaaacaacctgagtataat |
281 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
18015946 |
gtgagtttctccaaacaacctgagtataat |
18015917 |
T |
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