View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1536_low_14 (Length: 261)

Name: NF1536_low_14
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1536_low_14
NF1536_low_14
[»] chr6 (7 HSPs)
chr6 (4-243)||(370911-371150)
chr6 (110-243)||(1459667-1459800)
chr6 (114-243)||(1471049-1471178)
chr6 (114-236)||(7564884-7565006)
chr6 (177-234)||(1442234-1442291)
chr6 (175-235)||(9819957-9820017)
chr6 (175-235)||(9825637-9825697)
[»] chr7 (1 HSPs)
chr7 (114-243)||(3926855-3926984)
[»] chr4 (1 HSPs)
chr4 (114-243)||(55419578-55419707)
[»] chr1 (2 HSPs)
chr1 (174-235)||(25478730-25478791)
chr1 (174-235)||(25869303-25869364)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 371150 - 370911
Alignment:
Q  4 attcttgcgaaactgaagttagggttcttactttaggtaccaactcttggagtacgattccatgcttaccttctcaactactcatgggtgaactcgaagt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371150 attcttgcgaaactgaagttagggttcttactttaggtaccaactcttggagtacgattccatgcttaccttctcaactactcatgggtgaactcgaagt 371051  T
Q  104 ttctctaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagag 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  371050 ttctccaggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggtcattctttctcttgatttagaaaaagag 370951  T
Q  204 tattatcaagagatttcgcagcctgattatggtctagatg 243  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  370950 tattatcaagagatttcgcagcctgattatggtctagatg 370911  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 1459800 - 1459667
Alignment:
Q  110 aggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattat 209  Q
    |||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| ||| |||||||||||||||||||| ||| |||| ||||    
T  1459800 aggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttat 1459701  T
Q  210 caagagatttcgcagcctgattatggtctagatg 243  Q
    |||||||||| ||||||| |||||||| ||||||    
T  1459700 caagagattttgcagcctaattatggtttagatg 1459667  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 1471178 - 1471049
Alignment:
Q  114 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 213  Q
    ||||||||| |||| ||||||||||||||| |||||||| || ||||  ||  |||| ||| ||||||||||||| |||||| ||| |||| ||||||||    
T  1471178 aaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaag 1471079  T
Q  214 agatttcgcagcctgattatggtctagatg 243  Q
    ||||||  ||||||||||||| | ||||||    
T  1471078 agattttacagcctgattatgatttagatg 1471049  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 7565006 - 7564884
Alignment:
Q  114 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 213  Q
    ||||||||||||||  ||||| |||||||||||  |||| || | ||  ||  |||||||| ||||||||| ||||||||||  || |||| ||||||||    
T  7565006 aaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaag 7564907  T
Q  214 agatttcgcagcctgattatggt 236  Q
    |||||| |||||| |||||||||    
T  7564906 agattttgcagccagattatggt 7564884  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 1442291 - 1442234
Alignment:
Q  177 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 234  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |  |||||||||||    
T  1442291 attctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 9820017 - 9819957
Alignment:
Q  175 ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 235  Q
    ||||| ||||||||||||| |  | |||||  ||||||||||||| |||||||||||||||    
T  9820017 ccattgtttctcttgatttggggagagagtcctatcaagagattttgcagcctgattatgg 9819957  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 9825697 - 9825637
Alignment:
Q  175 ccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 235  Q
    ||||| ||||||||||||| |  | |||||  ||||||||||||| |||||||||||||||    
T  9825697 ccattgtttctcttgatttggggacagagtcctatcaagagattttgcagcctgattatgg 9825637  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 3926855 - 3926984
Alignment:
Q  114 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 213  Q
    |||||||||||||| || |||||||||| ||||  | || |||||||| |  ||||||||| |||||||||||||||||||| ||| ||||  |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  214 agatttcgcagcctgattatggtctagatg 243  Q
    ||||||| | ||| |||| |||||| ||||    
T  3926955 agatttcacggcccgattttggtcttgatg 3926984  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 55419578 - 55419707
Alignment:
Q  114 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 213  Q
    |||||||||||||| ||||||||||||| ||||  |||| || ||||  || ||  ||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  214 agatttcgcagcctgattatggtctagatg 243  Q
     |||| |||| || || |||||||||||||    
T  55419678 tgattccgcatcccgagtatggtctagatg 55419707  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 25478730 - 25478791
Alignment:
Q  174 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 235  Q
    |||||| |||||||| |||| |  ||||||| ||||||||||||||| ||||||||||||||    
T  25478730 gccattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgg 25478791  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 25869364 - 25869303
Alignment:
Q  174 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 235  Q
    |||||| |||||||| |||| | ||||||||  |||||||| ||||| ||||||||||||||    
T  25869364 gccattgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgg 25869303  T

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