View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1536_low_15 (Length: 246)

Name: NF1536_low_15
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1536_low_15
NF1536_low_15
[»] chr6 (5 HSPs)
chr6 (8-169)||(23896164-23896325)
chr6 (8-169)||(18420031-18420192)
chr6 (166-246)||(18420296-18420376)
chr6 (166-246)||(23895980-23896060)
chr6 (108-162)||(14101770-14101824)
[»] scaffold0040 (4 HSPs)
scaffold0040 (8-169)||(31355-31516)
scaffold0040 (17-169)||(9535-9686)
scaffold0040 (166-214)||(31203-31251)
scaffold0040 (187-246)||(9811-9870)
[»] chr3 (12 HSPs)
chr3 (8-169)||(28352269-28352430)
chr3 (8-169)||(28368201-28368362)
chr3 (8-169)||(28376019-28376180)
chr3 (8-169)||(28383841-28384002)
chr3 (8-169)||(38529685-38529846)
chr3 (166-246)||(28352085-28352165)
chr3 (166-246)||(28368018-28368098)
chr3 (166-246)||(28375836-28375916)
chr3 (166-246)||(28383658-28383738)
chr3 (166-225)||(38529522-38529581)
chr3 (100-168)||(4951167-4951235)
chr3 (187-246)||(4951361-4951420)
[»] scaffold0028 (4 HSPs)
scaffold0028 (8-169)||(94979-95140)
scaffold0028 (8-169)||(104420-104581)
scaffold0028 (166-246)||(94795-94875)
scaffold0028 (166-246)||(104236-104316)
[»] chr7 (7 HSPs)
chr7 (8-169)||(4118972-4119133)
chr7 (8-169)||(7592485-7592646)
chr7 (8-169)||(15172798-15172959)
chr7 (8-169)||(15202224-15202385)
chr7 (166-246)||(7592750-7592830)
chr7 (166-246)||(15173063-15173143)
chr7 (177-246)||(15202497-15202566)
[»] chr5 (19 HSPs)
chr5 (8-169)||(22488666-22488826)
chr5 (8-169)||(24412307-24412468)
chr5 (8-169)||(30445377-30445538)
chr5 (8-169)||(30454749-30454910)
chr5 (8-169)||(30459807-30459968)
chr5 (29-169)||(18568538-18568678)
chr5 (8-169)||(4635442-4635602)
chr5 (8-169)||(24421767-24421917)
chr5 (166-246)||(22488930-22489010)
chr5 (166-246)||(18568782-18568862)
chr5 (166-246)||(24412572-24412652)
chr5 (166-246)||(24422021-24422101)
chr5 (166-246)||(30445193-30445273)
chr5 (166-246)||(30454565-30454645)
chr5 (166-246)||(30459623-30459703)
chr5 (166-214)||(4635706-4635754)
chr5 (19-169)||(24278856-24279004)
chr5 (19-169)||(24383210-24383358)
chr5 (187-245)||(22118460-22118518)
[»] chr4 (16 HSPs)
chr4 (8-169)||(3242835-3242996)
chr4 (8-169)||(3917545-3917706)
chr4 (8-169)||(26811987-26812148)
chr4 (8-169)||(26821454-26821615)
chr4 (8-169)||(54690461-54690622)
chr4 (8-169)||(54699892-54700053)
chr4 (8-169)||(15843445-15843605)
chr4 (8-169)||(37058566-37058727)
chr4 (166-246)||(15843261-15843341)
chr4 (166-246)||(37058831-37058911)
chr4 (166-246)||(3242651-3242731)
chr4 (166-246)||(3917810-3917890)
chr4 (166-246)||(26812252-26812332)
chr4 (166-246)||(26821719-26821799)
chr4 (166-246)||(54690277-54690357)
chr4 (166-246)||(54699708-54699788)
[»] scaffold0482 (2 HSPs)
scaffold0482 (8-158)||(3012-3162)
scaffold0482 (166-246)||(3277-3357)
[»] chr8 (3 HSPs)
chr8 (8-158)||(7789637-7789787)
chr8 (170-246)||(20713818-20713894)
chr8 (166-246)||(7789442-7789522)
[»] scaffold0001 (2 HSPs)
scaffold0001 (8-169)||(412777-412938)
scaffold0001 (166-210)||(413042-413086)
[»] scaffold0233 (2 HSPs)
scaffold0233 (8-169)||(26652-26812)
scaffold0233 (166-214)||(26500-26548)
[»] chr2 (5 HSPs)
chr2 (28-169)||(24023289-24023429)
chr2 (8-169)||(14272537-14272696)
chr2 (8-169)||(31711013-31711162)
chr2 (166-246)||(31710829-31710909)
chr2 (166-246)||(24023105-24023185)
[»] chr1 (4 HSPs)
chr1 (20-169)||(15810528-15810676)
chr1 (187-246)||(15810344-15810403)
chr1 (187-246)||(40999396-40999455)
chr1 (94-169)||(41000928-41001003)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 23896325 - 23896164
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  23896325 gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa 23896226  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23896225 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 23896164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 18420031 - 18420192
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  18420031 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 18420130  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18420131 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 18420192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 18420296 - 18420376
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  18420296 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagcaaattcaaagctctct 18420376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 23896060 - 23895980
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23896060 tttgtaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagcaaattccaagctctct 23895980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 14101770 - 14101824
Alignment:
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattga 162  Q
    |||||||||||||||||||||  |  |||||| ||||||||| ||||||||||||    
T  14101770 agaacattctgagaacgttcttcccgttttaatgaagaaaagtgaaatcaattga 14101824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 31516 - 31355
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  31516 gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa 31417  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31416 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 31355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 9535 - 9686
Alignment:
Q  17 aacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaaagaacattc 116  Q
    ||||||| ||||||| ||| ||||||||||| || ||||| | |||  ||||||||| ||||||| ||   |||||  |||| ||||||| |||||||||    
T  9535 aacattgagcaacaatttaaacaactcattatagctggttctttcactcgcaagcaa-gcaacagagcaagcaaagctaggcaaatcagacagaacattc 9633  T
Q  117 tgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||||||| |||||||| ||||||||||| |||| ||| ||||||||||    
T  9634 tgagaacgttctagctatttttaagaagaaaagtgaaaacaaatgagactttg 9686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 31251 - 31203
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31251 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagc 31203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 9811 - 9870
Alignment:
Q  187 aagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  9811 aagtgaaaaacatcactacaaacaaagctcttcgcaaacaaagcaaatttcaagctctct 9870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 28352430 - 28352269
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28352430 gacatcatcagaagtgggctgcaagttatacaactcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 28352331  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28352330 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 28352269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 28368362 - 28368201
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28368362 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 28368263  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28368262 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 28368201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 28376180 - 28376019
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28376180 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 28376081  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28376080 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 28376019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 28384002 - 28383841
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28384002 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 28383903  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28383902 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 28383841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 38529846 - 38529685
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||| | | ||||||    
T  38529846 gacatcatcaacattgggcaacaagttaaacaactcattacagctggttctctcacgcgcaagcaa-gcaacagtgctttcaaagtcagacaattcagaa 38529748  T
Q  108 agaacattctgagaacgttctggctattttaaagaag-aaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  38529747 agaacattctgagaacggtctggctattttaaagaagaaaaaaagaaatcaattgagactttg 38529685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 28352165 - 28352085
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  28352165 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacaaacaaagcaaattccaagctctct 28352085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 28368098 - 28368018
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  28368098 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacaaacaaagcaaattccaagctctct 28368018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 28375916 - 28375836
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  28375916 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacaaacaaagcaaattccaagctctct 28375836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 28383738 - 28383658
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  28383738 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacaaacaaagcaaattccaagctctct 28383658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 38529581 - 38529522
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatc 225  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38529581 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaatc 38529522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 4951167 - 4951235
Alignment:
Q  100 aatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagacttt 168  Q
    ||||||| | |||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  4951167 aatcagacataacattatgagaacgttcttcctatttttaagaagaaaagagaaatcaattgagacttt 4951235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 4951361 - 4951420
Alignment:
Q  187 aagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||| |||| |||||||| ||||| |||| |||||||||||||||| |||||    
T  4951361 aagtgaaaatcaccactacaaacaaaactctttgcaaacaaagcaaattccaagttctct 4951420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 95140 - 94979
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  95140 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 95041  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95040 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 94979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 104581 - 104420
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  104581 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 104482  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  104481 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 104420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 94875 - 94795
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  94875 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 94795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 104316 - 104236
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  104316 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 4119133 - 4118972
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | || ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  4119133 gacatcatcagaagtgagcaacaagttatacagctcattaaagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa 4119034  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4119033 agaacattctgagaacgttttggctattttaaagaagaaaagagaaatcaattgagactttg 4118972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 7592485 - 7592646
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  7592485 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 7592584  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7592585 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 7592646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 15172798 - 15172959
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | || ||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15172798 gacatcatcagaagtgagcagcaagttatacagctcattatagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcagaa 15172897  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15172898 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 15172959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 15202224 - 15202385
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||    
T  15202224 gacatcatcagaagtgggcagcaagttatacaactcattacagctggttatctcatgcgcaagcaaagcaacagtgcttttaaagccagacaaatcagaa 15202323  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15202324 agaacattcatagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 15202385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 7592750 - 7592830
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  7592750 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 7592830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 15173063 - 15173143
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||    
T  15173063 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagaaaattccatgctctct 15173143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 15202497 - 15202566
Alignment:
Q  177 atatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  15202497 atatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaaggaaattccaagctctct 15202566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 22488666 - 22488826
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    |||||||||| |||| |||| ||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||    
T  22488666 gacatcatcagcattaggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaa-gcaacagtgctttcaaagccaggcaaatcagaa 22488764  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22488765 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 22488826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 24412307 - 24412468
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  24412307 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 24412406  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24412407 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 24412468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 30445538 - 30445377
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30445538 gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa 30445439  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  30445438 agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttg 30445377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 30454910 - 30454749
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30454910 gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa 30454811  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  30454810 agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttg 30454749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 30459968 - 30459807
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30459968 gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa 30459869  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  30459868 agaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttg 30459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 18568538 - 18568678
Alignment:
Q  29 caagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaaagaacattctgagaacgttct 128  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18568538 caagttacacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttct 18568637  T
Q  129 ggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  18568638 ggctatttttaagaagaaaagagaaatcaaatgagactttg 18568678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 4635442 - 4635602
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    |||||||||| || || |||||||||||||||||||||||||  ||||| ||||| |||||||||| |||| ||||||||||||| ||||| ||||||||    
T  4635442 gacatcatcagcagtgcgcaacaagttatacaactcattacaactggttctctcacgcgcaagcaa-gcaatagtgctttcaaagccaggcaaatcagaa 4635540  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  4635541 agaacattttgagaacattctagctattttaaagaagaaaagaaaaatcaattgagactttg 4635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 24421767 - 24421917
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  24421767 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 24421866  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||           |||||||||||||||||||||||||||||||||||||||||||||    
T  24421867 agaaca-----------ttctggctattttaaagaagaaaagagaaatcaattgagactttg 24421917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 22488930 - 22489010
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  22488930 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagcaaattccaagctctct 22489010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 18568782 - 18568862
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  18568782 tttgaaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 18568862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 24412572 - 24412652
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  24412572 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 24412652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 24422021 - 24422101
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  24422021 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 24422101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 30445273 - 30445193
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  30445273 tttgaaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 30445193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 30454645 - 30454565
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  30454645 tttgaaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 30454565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 30459703 - 30459623
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  30459703 tttgaaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 30459623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 4635706 - 4635754
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4635706 tttgcaagctaatatctctctaagtgaaaatcatcactgcaaacaaagc 4635754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 24279004 - 24278856
Alignment:
Q  19 cattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaaagaacattctg 118  Q
    ||||||||||||||| | |||  ||||||||  ||||  |||||||| ||||||| |||||| |||   |||||| |||| ||||||| | |||||| ||    
T  24279004 cattgggcaacaagtaa-acagttcattacaactggtactctcatgcacaagcaa-gcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tg 24278908  T
Q  119 agaacgttctggctatttt-aaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  24278907 agaacgttctggctatttttaaagaagaagagagaaatcaactgagattttg 24278856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 24383210 - 24383358
Alignment:
Q  19 cattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaaagaacattctg 118  Q
    ||||||||||||||| | |||  ||||||||  ||||  |||||||| ||||||| |||||| |||   |||||| |||| ||||||| | |||||| ||    
T  24383210 cattgggcaacaagtaa-acagttcattacaactggtactctcatgcacaagcaa-gcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tg 24383306  T
Q  119 agaacgttctggctatttt-aaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||    
T  24383307 agaacgttctggctatttttaaagaagaagagagaaatcaactgagattttg 24383358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 22118518 - 22118460
Alignment:
Q  187 aagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctc 245  Q
    ||||||||||||||||| || |||||||||||| ||| |||| ||||||||||||||||    
T  22118518 aagtgaaaatcatcactacatacaaagctcttcacaaacaaatcaaattccaagctctc 22118460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 3242996 - 3242835
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3242996 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 3242897  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242896 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 3242835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 3917545 - 3917706
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3917545 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 3917644  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3917645 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 3917706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 26811987 - 26812148
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  26811987 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 26812086  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812087 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 26812148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 26821454 - 26821615
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  26821454 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 26821553  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821554 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 26821615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 54690622 - 54690461
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  54690622 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 54690523  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54690522 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 54690461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 54700053 - 54699892
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  54700053 gacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcagaa 54699954  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54699953 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 54699892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 15843605 - 15843445
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  15843605 gacatcatcagcattgggcagcaaattatacagctcattacagctggttatctcatgcgcaagcaa-gcaacagtgctttcaaagccaggcaaatcagaa 15843507  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15843506 agaacattatgagaacgttatggctattttaaagaagaaaagagaaatcaattgagactttg 15843445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 37058566 - 37058727
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | ||||||  |||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  37058566 gacatcatcagaagtgggcacaaagttatacagctcattacagctggttatctcatgcgcaagcaaaacaacagtgctttcaaagccaggcaaatcagaa 37058665  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37058666 agaacattttgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 37058727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 15843341 - 15843261
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  15843341 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagcaaattccaagctctct 15843261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 37058831 - 37058911
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||    
T  37058831 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacagagctcttcgcaaacaaagcaaattccaagctctct 37058911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 3242731 - 3242651
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  3242731 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 3242651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 3917810 - 3917890
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  3917810 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 3917890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 26812252 - 26812332
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  26812252 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 26812332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 26821719 - 26821799
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  26821719 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 26821799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 54690357 - 54690277
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  54690357 tttgaaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 54690277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 54699788 - 54699708
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  54699788 tttgaaagctaatatctctcaaagtgaaaatcatcactacaaacaaagctcttcgcatacaaagcaaattccaagctctct 54699708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 3012 - 3162
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3012 gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa 3111  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaa 3162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 3277 - 3357
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| |||||||||||| || ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  3277 tttgtaagctaatatctgtcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 3357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 7789787 - 7789637
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7789787 gacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaa 7789688  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7789687 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaa 7789637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 20713818 - 20713894
Alignment:
Q  170 caagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  20713818 caagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagaaaattccaagctctct 20713894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 7789522 - 7789442
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||| |||||||||||| || ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  7789522 tttgtaagctaatatctgtcaaagtgaaaatcatcactacaaacaaagctcttcacatacaaagcaaattccaagctctct 7789442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 412777 - 412938
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||||||||  | |||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||    
T  412777 gacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaatagtgctttcaaagtcagacaaatcagaa 412876  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  412877 agaacattatgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 412938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 413042 - 413086
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaaca 210  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  413042 tttgcaagctaatatctctcaaagtgaaaatcatcactacaaaca 413086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 26812 - 26652
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    |||||||||| ||||||||| ||||||||||| |||||||||| || ||| ||||||||||  ||| |||||||||||||||||| ||| | ||||||||    
T  26812 gacatcatcagcattgggcagcaagttatacagctcattacagctgattaactcatgcgcatacaa-gcaacagtgctttcaaagccagacaaatcagaa 26714  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26713 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 26652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 26548 - 26500
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagc 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26548 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagc 26500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 24023429 - 24023289
Alignment:
Q  28 acaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaaagaacattctgagaacgttc 127  Q
    |||||||| ||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||| | ||||| |||||||||| |||||||||    
T  24023429 acaagttaaacagctcattacagttggttctctcacgcgcaag-aaagcaacagtgctttcaaagtaaggcaattcagacagaacattctaagaacgttc 24023331  T
Q  128 tggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24023330 tggctattttaaagaagaaaagagaaatcaattgagactttg 24023289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 14272537 - 14272696
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||| || |   ||||||||| |||||| |||||||||||| |||| | |||||     
T  14272537 gacataatcaacattgggcaacaagtaa-acaactcattacagttggttctccccctcgcaagcaa-gcaacaatgctttcaaagttaggcaattcagac 14272634  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    |||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  14272635 agaacattctgaaaacgttctggctatttataagtagaaaagagaaatcaattgagactttg 14272696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 31711162 - 31711013
Alignment:
Q  8 gacatcatcaacattgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaa 107  Q
    |||||||||| ||||||||||||||||||||| |||||||||  ||||| ||||| |||||||| |||||||||||||||||||| ||||  ||||||||    
T  31711162 gacatcatcagcattgggcaacaagttatacagctcattacaactggttctctcacgcgcaagc-aagcaacagtgctttcaaagccaggaaaatcagaa 31711064  T
Q  108 agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||||           ||||||||||||| |||||||||||||||||||||||||||||||    
T  31711063 agaaca-----------ttctggctatttttaagaagaaaagagaaatcaattgagactttg 31711013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 31710909 - 31710829
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  31710909 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaacaaagcaaattccaagctctct 31710829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 24023185 - 24023105
Alignment:
Q  166 tttgcaagctaatatctctctaagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  24023185 tttgcaagctaatatctctctaagtgaaaatcatcactacaaacaaagctcttcgcaaataaagcaaattccaagctctct 24023105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 15810676 - 15810528
Alignment:
Q  20 attgggcaacaagttatacaactcattacagttggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggctaatcagaaagaacattctga 119  Q
    |||| ||||||||| | ||| |||||||||| ||||| |||||  ||||||||| ||||||||||   |||||| | || ||||||| | ||||||||||    
T  15810676 attgagcaacaagtaaaacagctcattacagctggttctctcactcgcaagcaa-gcaacagtgcaagcaaagttatgcaaatcagacataacattctga 15810578  T
Q  120 gaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    || | ||||| ||||||| ||||||||||  ||||||||||  |||||||    
T  15810577 gatcattctgtctatttttaagaagaaaaatgaaatcaattaggactttg 15810528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 15810403 - 15810344
Alignment:
Q  187 aagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||||||||| ||||||||||    
T  15810403 aagtgaaaaacatcactacaaacaaagctcctcgcaaacaaagcaaatttcaagctctct 15810344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 40999455 - 40999396
Alignment:
Q  187 aagtgaaaatcatcacttcaaacaaagctcttcgcaatcaaagcaaattccaagctctct 246  Q
    ||||||||| ||||||| || |||||||||||||||| ||||| ||||||||||||||||    
T  40999455 aagtgaaaaacatcactacatacaaagctcttcgcaaacaaagtaaattccaagctctct 40999396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 41001003 - 41000928
Alignment:
Q  94 caggctaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttg 169  Q
    ||||| ||||||| | |||||||||||| | ||||| | | ||| ||||||||||| |||||||| ||||||||||    
T  41001003 caggcaaatcagacataacattctgagatctttctgcccaattttaagaagaaaagtgaaatcaaatgagactttg 41000928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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