View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_low_18 (Length: 237)
Name: NF1536_low_18
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 36952403 - 36952196
Alignment:
| Q |
13 |
catagggcaataatctttccagtagaagtctacagaacagtgtggaggagtcaattgtgaaccctccttaggaaagtacatccttattctagctctttct |
112 |
Q |
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| T |
36952403 |
catagggcaataatctttccagtagaagtctacagaacagtgtggaggagtcaattgtgaaccctccttaggaaagtacatccttattctagctctttct |
36952304 |
T |
|
| Q |
113 |
ccaaaatcagacgaccgaacttcacgtgcaggaactggtgtaatttttcctacagtgtacctgagaattgagcnnnnnnnnttcaaatcaaagcttcata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36952303 |
ccaaaatcagacgaccgaacttcacgtgcaggaactggtgtaatttttcctacagtgtacctgagaattgagcaaaaaaaattcaaatcaaagcttcata |
36952204 |
T |
|
| Q |
213 |
taaaacat |
220 |
Q |
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|||||||| |
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| T |
36952203 |
taaaacat |
36952196 |
T |
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