View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1536_low_3 (Length: 535)
Name: NF1536_low_3
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_low_3 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 2 - 383
Target Start/End: Original strand, 9522 - 9906
Alignment:
| Q |
2 |
gtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaa |
101 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9522 |
gtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaa |
9621 |
T |
|
| Q |
102 |
catgtcaaaattggctgctatagaaaaataaataattagtgaatgacagtggaaaaaaacaagctgtcaaggcacatggccatgaaaaggnnnnnnnnca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||| || |
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| T |
9622 |
catgtcaaaattggctgctatagaaaaataaataattagtgaatgacagtgggaaaaaacaagtgttgaaggcacatggccatg-aaagggaaaaaaaca |
9720 |
T |
|
| Q |
202 |
aaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
9721 |
aaattggaaaacttatcttatgaaacaacatcatgctcgttcatttgttcttgtgtggcctagatttcatcaaagaaaatccaataccaaataattgtaa |
9820 |
T |
|
| Q |
302 |
tacta---attatttaatatttcaagttggcaagtgtacctgaagtgca--ctgtccaagtatggtgtggtggcatcaagttggcaa |
383 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| | ||||||||||||||||| |
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| T |
9821 |
tactaattattatttaatatttcaagttggc-agtgtacctgaagtgcaagtggatcaagtatggtgggatggcatcaagttggcaa |
9906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 484
Target Start/End: Original strand, 13870 - 14335
Alignment:
| Q |
2 |
gtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaa |
101 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
13870 |
gtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctccaa |
13969 |
T |
|
| Q |
102 |
catgtcaaaattggctgctatagaaaaataaataattagtgaatgacagtggaaaaaaacaagctgtcaaggcacatggccatgaaaaggnnnnnnnnca |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||| || |
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| T |
13970 |
---------attggctgctatagaaaaataaataattagtgaatgacagtaggaaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaa-ca |
14059 |
T |
|
| Q |
202 |
aaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaa |
301 |
Q |
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||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
14060 |
aaattggaaaacttatcatatgaaacaacatcatgaccgttcatttgttcttgtgtggcctagatttcgtcaaagagaatccaataccaaataattgtaa |
14159 |
T |
|
| Q |
302 |
tacta---attatttaatatttcaagttggcaagtgtacctgaagtgca--ctgtccaagtatggtgtggtggcatcaagttggcaactgtatctatcat |
396 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| | ||| ||||||||||||| |||| |
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| T |
14160 |
tactaattattatttaatatttcaagttggc-agtgtacctgaagtgcaagtggatcaagtatggtgggatggtatcaagttggcaagtgta-------- |
14250 |
T |
|
| Q |
397 |
gttactttcatgcactattgt-ttatctcaaaataataggtatcctttctcggtgtctttctttaatactctagagagaacttcaactt |
484 |
Q |
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|| ||| || | | || |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||| |
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| T |
14251 |
--taattt--agctgtttggtgttatctcaaaataataggtatcctttcttggcgtctttctttaatactctagacagaacctcaactt |
14335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 10169 - 10485
Alignment:
| Q |
29 |
ggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaacatgtcaaaattggctgctatagaaaa |
128 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
10169 |
ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatagaaaa |
10268 |
T |
|
| Q |
129 |
ataaataattagtgaatgacagtggaaaaaaacaagctgtcaaggcacatggccatgaaaaggnnnnnnnncaaaattggaaaacttatcttatgaaaca |
228 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
10269 |
ttaaataattagtgaatgacagtggcaaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaaa-aaaattggaaaacttatcttatgtaaca |
10367 |
T |
|
| Q |
229 |
acatcatgcccattcatttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaatactaattatttaatatttcaagttgg |
328 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10368 |
acatcatgcccgttcatttgttcttgtgtggcctagatttcatcaaagagaatccaataccatataattgtaatactaattatttaatatttcaagttgg |
10467 |
T |
|
| Q |
329 |
caagtgtacctgaagtgca |
347 |
Q |
| |
|
| ||||||||| ||||||| |
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|
| T |
10468 |
c-agtgtacctcaagtgca |
10485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 10534 - 10628
Alignment:
| Q |
381 |
caactgtatctatcatgttactttcatgcactattgtttatctcaaaataataggtatcctttctcggtgtctttctttaatactctagagagaa |
475 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
10534 |
caactatatctattatgttactttcatgcactattgtttatctcaaaataataggtatcctttcttggcgtctttctttaatactctagacagaa |
10628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 16782120 - 16782253
Alignment:
| Q |
2 |
gtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaa |
101 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
16782120 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgtagtttttctgcaa |
16782219 |
T |
|
| Q |
102 |
catgtcaaaattggctgctatagaaaaataaata |
135 |
Q |
| |
|
| ||| || ||||| ||||||||||||| ||||| |
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|
| T |
16782220 |
cttgtgaatattggttgctatagaaaaaaaaata |
16782253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 16782917 - 16783010
Alignment:
| Q |
244 |
atttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaatactaattattta-atatttcaagttggcaagtgta |
336 |
Q |
| |
|
||||||||| | ||| |||||| |||| ||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
16782917 |
atttgttctagggtgacctagacttcaccagagagaatccagtcacaaataatagtaatactaattatttatatatttcaagttgggaagtgta |
16783010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 16876065 - 16875996
Alignment:
| Q |
245 |
tttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaatactaattattta |
314 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| | |||||||| |||||||||||||||| |
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|
| T |
16876065 |
tttgttcttgtgtggcctagatttcaccggagagaatccagtcacaaataatattaatactaattattta |
16875996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 38938503 - 38938380
Alignment:
| Q |
1 |
ggtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgca |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| || || |||| |||||||||||| | |||||||||| ||||||||||||||||||| |
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| T |
38938503 |
ggtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgca |
38938405 |
T |
|
| Q |
101 |
acatgtcaaaattggctgctataga |
125 |
Q |
| |
|
|| |||||| |||||||||| |||| |
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|
| T |
38938404 |
acttgtcaatattggctgctgtaga |
38938380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 38938323 - 38938275
Alignment:
| Q |
200 |
caaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
38938323 |
caaaattggaaaacttatcatatgaaacaacatcatgtccattcatttg |
38938275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 38942444 - 38942398
Alignment:
| Q |
416 |
gtttatctcaaaataataggtatcctttctcggtgtctttctttaat |
462 |
Q |
| |
|
|||||| |||||||| || ||||||||||| |||||||||||||||| |
|
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| T |
38942444 |
gtttatatcaaaatattaagtatcctttcttggtgtctttctttaat |
38942398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11983168 - 11983122
Alignment:
| Q |
1 |
ggtttggattggagatgactttggtctaggaagatgaaatatgcgtt |
47 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
11983168 |
ggtttggattggagatgactttgctctatgaagatgaaatatgcgtt |
11983122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 11982896 - 11982848
Alignment:
| Q |
200 |
caaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg |
248 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
11982896 |
caaaattggaaaacttatcaattcaaacaacatcatgtccattcatttg |
11982848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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