View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1536_low_4 (Length: 507)
Name: NF1536_low_4
Description: NF1536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1536_low_4 |
 | |
|
| [»] scaffold0302 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 151 - 502
Target Start/End: Original strand, 1236346 - 1236697
Alignment:
| Q |
151 |
gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacactaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1236346 |
gacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccccgacacactaaa |
1236445 |
T |
|
| Q |
251 |
aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1236446 |
aacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattc |
1236545 |
T |
|
| Q |
351 |
aattgtcatccatctgtgatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1236546 |
aattgtcatccatctgtgatccttcatttattaacaagtcggctatttgattggcttccttttttatatgaacaaagcccacatccatcaaactctacat |
1236645 |
T |
|
| Q |
451 |
gttttttcattttgttgctcaagaatctcagattaaatggacacccatcact |
502 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1236646 |
gttttttcattttgttgctcaagaatttcagattaaatggacacccatcact |
1236697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 1236235 - 1236355
Alignment:
| Q |
15 |
taatatacctgtattttattagttctgtactataaataggactcttgtaagaatgtacaaagaacttagtatttcgaacttggtatttctaagttgttgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1236235 |
taatatacctgtattttattagttctgtcctataaataggactcttgtaagaatgtacaaagaacttagtatttctaacttggtatttctaagttgttgt |
1236334 |
T |
|
| Q |
115 |
taaactggatcgacaataaca |
135 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
1236335 |
taaacttgatcgacaataaca |
1236355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 149 - 502
Target Start/End: Complemental strand, 1183373 - 1183043
Alignment:
| Q |
149 |
aagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacacacta |
248 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
1183373 |
aagacaatcacacatgacagatgcaaaaatatcaaccccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaact-ccctcgacacta |
1183275 |
T |
|
| Q |
249 |
aaaacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatat |
348 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| ||||||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1183274 |
aaaacacattcaacagcaacatgaagcgcgc--------------------aaaaacagaacttagcagacctacattatctatatcaaaacctagatat |
1183195 |
T |
|
| Q |
349 |
tcaattgtcatccatctgtgatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctac |
448 |
Q |
| |
|
|| |||| ||||| | | ||| ||| | || |||| |||| | ||||||||| |||||| | ||||||||||||||||| | ||||| |||||||| | |
|
|
| T |
1183194 |
tctattgccatccgtttatgaccctactattgctaactagtcggttatttgattagcttccctatttatatgaacaaagcccatatccaccaaactctgc |
1183095 |
T |
|
| Q |
449 |
atgttttttcattttgttgctcaagaatctcagattaaatggacacccatcact |
502 |
Q |
| |
|
| ||||||||||||||||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
1183094 |
a--ttttttcattttgttgctcaagaatcttatattacatggacacccatcact |
1183043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 1194190 - 1194126
Alignment:
| Q |
174 |
aaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactccc |
238 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
1194190 |
aaaatatcaacaccaactatgctgcagccagcaaactgcataggaccaccagaaggaaaaatccc |
1194126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 1194111 - 1193974
Alignment:
| Q |
277 |
cgcaaaaagagtgcaacagctacaaaaacagaactttgcagacctgcattatctacatcaaaacctagatattcaattgtcatccatctgtgatccttca |
376 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| ||||||| ||| || |||| ||||||| | | |
|
|
| T |
1194111 |
cgcaaaaatactgcaacagctacaaaaatagaactcggcagaactgcattatctacatagacgcctggatattctgttgccacccatttgtgatcatact |
1194012 |
T |
|
| Q |
377 |
tttattaacaagtcagctatttgattggcttccttttt |
414 |
Q |
| |
|
||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
1194011 |
tttgctaacaagttggctatttgatttgcttccttttt |
1193974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 145 - 502
Target Start/End: Complemental strand, 20565 - 20204
Alignment:
| Q |
145 |
cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac |
244 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||| |||| |||| | | ||||||||||| |||||||| |||||||||||| ||||| ||| |
|
|
| T |
20565 |
cctaaatacaataacacatgacagatcacaaaatatcaactccaactatgttactgccagcaaactgtataggaccaccagaaggaaaaatccccagcac |
20466 |
T |
|
| Q |
245 |
actaaaaacacacccaacagcaacacaaagctcgcaaaaagagtgcaacagctacaaaa----acagaactttgcagacctgcattatctacatcaaaac |
340 |
Q |
| |
|
||||||||||||||||||| |||||| |||| | |||||| || ||||||| ||||||| |||||||| |||||||||||||||| |||| |||| |
|
|
| T |
20465 |
actaaaaacacacccaacaacaacacgaagcacacaaaaatagcgcaacaggtacaaaataaaacagaactcggcagacctgcattatccacattgaaac |
20366 |
T |
|
| Q |
341 |
ctagatattcaattgtcatccatctgtgatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatca |
440 |
Q |
| |
|
|||||||||| |||| |||| | || ||||| | |||| |||| |||| | ||||||||| |||||||| |||| || ||||||| | |||||||||| |
|
|
| T |
20365 |
ctagatattctattgccatcagttcgtaatcctacttttactaacgagtcggttatttgattagcttccttgtttaaattaacaaagaccacatccatca |
20266 |
T |
|
| Q |
441 |
aactctacatgttttttcattttgttgctcaagaatctcagattaaatggacacccatcact |
502 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20265 |
aactctgcatgtttttacattttgttgctcaagaatctcagattaaatgaacacccatcact |
20204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 20256439 - 20256510
Alignment:
| Q |
145 |
cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcatag |
216 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| |||| |||| |||| ||| |||||||||||| |
|
|
| T |
20256439 |
cctaaagacaataacacatgacagatgacaaaatatcaactccaactatgttgcagccaacaaactgcatag |
20256510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 12857476 - 12857370
Alignment:
| Q |
145 |
cctaaagacaataacacatgatcgacgacaaaatatcaacaccaaatatgctgcaaccagcaaactgcataggaccgccagaaggaaaactcccctacac |
244 |
Q |
| |
|
|||||| | |||||||||||| | |||||||||||||| |||| |||||||| ||||||| ||||||||||| | |||||||||| ||||| ||| |
|
|
| T |
12857476 |
cctaaatataataacacatgacatatgacaaaatatcaactccaactatgctgctgtcagcaaattgcataggaccactagaaggaaaaatccccagcac |
12857377 |
T |
|
| Q |
245 |
actaaaa |
251 |
Q |
| |
|
||||||| |
|
|
| T |
12857376 |
actaaaa |
12857370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University