View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15370_high_1 (Length: 366)
Name: NF15370_high_1
Description: NF15370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15370_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 13138068 - 13138414
Alignment:
| Q |
10 |
acatcatcaactcagtttggtttgcaaaaaatcaaatgagatttagaaacaagaaaattcattgaaaaagttctcttgccacattgatatctaatacaac |
109 |
Q |
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| T |
13138068 |
acatcatcaactcagtttggtttgcaagaaatcaaatgagatttagaaacaagaaaattcattgaaaaagttctcttgccacattgatatctaatacaac |
13138167 |
T |
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| Q |
110 |
tctttagggaagaattgtatgcacattgtatcatcaatgtactttctggctacccatgtgtttagggaattaggaaacagttgtgctgacactttagcta |
209 |
Q |
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| T |
13138168 |
tctttagggaagaattgtatgcacattgtatcatcagtgtactttctggctacccatgtgtttagggaattaggaaacagttgtgctgacactttagcta |
13138267 |
T |
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| Q |
210 |
acttaggcttatcccttaatcatcttatggtctggttaagtgctcctaattgtattaaagcatccttatagctaaaaataaatcaggaatgtgtgagttt |
309 |
Q |
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| T |
13138268 |
acttaggcttatcccttaatcatcttatggtctggttaagtgctcctaattgtattaaagcatccttatagctaaaaataaatcaagaatgtgtgagttt |
13138367 |
T |
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| Q |
310 |
gtttgttaaattctaaggaggttttggctttatatccccctcctttg |
356 |
Q |
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| T |
13138368 |
gtttgttaaattctaaggaggttttggctttatctccccctcctttg |
13138414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 16472677 - 16472632
Alignment:
| Q |
311 |
tttgttaaattctaaggaggttttggctttatatccccctcctttg |
356 |
Q |
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| T |
16472677 |
tttgttaatttctaaggaggttttggcttgatgtccccctcctttg |
16472632 |
T |
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