View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15370_low_1 (Length: 666)
Name: NF15370_low_1
Description: NF15370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15370_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 34043407 - 34043023
Alignment:
| Q |
1 |
tcatcatgttaatggagaaacgttcaagatatggaatcatccaatttctataatctggatttagaatccatgagtaacaaaactgtagtgacttccacac |
100 |
Q |
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| T |
34043407 |
tcatcatgttaatggagaaacgttcaagatatggaatcatccaatttctataatctggatttagaatccatgagtaacaaaactgtagtgacttccacac |
34043308 |
T |
|
| Q |
101 |
atgaatgcatacaacattaggtaacttttggcctttcaagcaaaggcctgaatttttaccttgtatttgggaaaaacgtgacctaaatattgcaaggatt |
200 |
Q |
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| T |
34043307 |
atgaatgcatacaacattaggtaacttttggcctttcaagcaaaggcctgaatttttaccttgtatttgggaaaaacgtgacctaaatattgcaaggatt |
34043208 |
T |
|
| Q |
201 |
gcatagcacaaatcattaaggtctttgatatttgtgagtattgagttcatggagattatatcacctgtactaaaatttatagttgaagaaccatctcttg |
300 |
Q |
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| T |
34043207 |
gcatagcacaaatcattaaggtctttgatatttgtgagtattgagttcatggagattatatcacctgtactaaaatttatagttgaagaaccatctcttg |
34043108 |
T |
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| Q |
301 |
attctccagcatatgcattgaggaaatagtgttcaaccaagacagccattcttgttacatgtattagaattgatagctgtaagag |
385 |
Q |
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| T |
34043107 |
attctccagcatatgcattgaggaaatagtgttcaaccaagacagccattcttgttacatgtattagaattgatagctgtaagag |
34043023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 422 - 648
Target Start/End: Complemental strand, 34042998 - 34042784
Alignment:
| Q |
422 |
atcatataacagataaatgtcaattagtcagaggtcattacttacaaggtcagctgtcaatttatccttttcatcataagaccgtttttgccatgctcca |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042998 |
atcatataacagataaatgtcaattagtcagaggtcat-acttacaaggtcagctgtcaatttatccttttcatcataagaccgtttttgccatgctcca |
34042900 |
T |
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| Q |
522 |
aaccatatgatctagtatcagtatagtatcagtacaatttcttttaatactagctatgaaccaaaatataagaaaaacaagagaaataaaagatggaaat |
621 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042899 |
aaccatatgatcta-----------gtatgagtacaatttcttttaatactagctatgaaccaaaatataagaaaaacaagagaaataaaagatggaaat |
34042811 |
T |
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| Q |
622 |
atataccatatttccatggatgctctt |
648 |
Q |
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| T |
34042810 |
atataccatatttccatggatgctctt |
34042784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 5900016 - 5899930
Alignment:
| Q |
66 |
atccatgagtaacaaaactgtagtgacttccacacatgaatgcatacaacattaggtaacttttggcctttcaagcaaaggcctgaa |
152 |
Q |
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| T |
5900016 |
atccatgagtaacaaaaatgaagagatttccacacatgaatgcacacaactattggtctgctttgtcctttcaagcaaagacctgaa |
5899930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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