View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15370_low_4 (Length: 300)

Name: NF15370_low_4
Description: NF15370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15370_low_4
NF15370_low_4
[»] chr6 (12 HSPs)
chr6 (22-174)||(31564691-31564843)
chr6 (23-275)||(33385359-33385600)
chr6 (22-275)||(33259628-33259890)
chr6 (127-275)||(33416197-33416345)
chr6 (134-281)||(24631975-24632122)
chr6 (93-275)||(9165228-9165418)
chr6 (90-164)||(29274300-29274376)
chr6 (233-279)||(31564838-31564884)
chr6 (233-274)||(33282241-33282282)
chr6 (233-274)||(33398042-33398083)
chr6 (233-274)||(33408952-33408993)
chr6 (76-151)||(2034496-2034572)
[»] scaffold0428 (2 HSPs)
scaffold0428 (23-189)||(3802-3977)
scaffold0428 (233-274)||(11970-12011)
[»] chr5 (6 HSPs)
chr5 (42-164)||(11684346-11684468)
chr5 (23-88)||(30653373-30653438)
chr5 (90-171)||(32059660-32059742)
chr5 (127-171)||(10391269-10391313)
chr5 (132-171)||(29115328-29115367)
chr5 (127-163)||(19113227-19113263)
[»] chr2 (4 HSPs)
chr2 (90-171)||(34339039-34339122)
chr2 (123-163)||(3102617-3102657)
chr2 (90-151)||(7103554-7103615)
chr2 (90-151)||(18962109-18962172)
[»] chr3 (5 HSPs)
chr3 (93-171)||(38462197-38462277)
chr3 (91-164)||(22232749-22232824)
chr3 (98-180)||(3015928-3016011)
chr3 (127-163)||(16790466-16790502)
chr3 (98-163)||(51278236-51278303)
[»] chr1 (5 HSPs)
chr1 (108-161)||(44207697-44207750)
chr1 (115-171)||(11639512-11639568)
chr1 (43-87)||(30014095-30014139)
chr1 (90-146)||(44422642-44422698)
chr1 (132-164)||(50764489-50764521)
[»] scaffold0024 (1 HSPs)
scaffold0024 (76-149)||(21335-21410)
[»] chr8 (8 HSPs)
chr8 (98-166)||(26717178-26717246)
chr8 (76-162)||(5290566-5290649)
chr8 (108-171)||(26716527-26716590)
chr8 (38-124)||(10079082-10079168)
chr8 (38-87)||(30389108-30389157)
chr8 (90-164)||(34788498-34788574)
chr8 (127-163)||(6918955-6918991)
chr8 (93-160)||(8536123-8536191)
[»] chr7 (8 HSPs)
chr7 (90-171)||(3610811-3610894)
chr7 (42-163)||(26935573-26935696)
chr7 (127-205)||(22388014-22388093)
chr7 (98-163)||(7244626-7244693)
chr7 (127-171)||(23721417-23721461)
chr7 (90-151)||(33894559-33894621)
chr7 (91-164)||(35536030-35536105)
chr7 (127-163)||(45078217-45078253)
[»] chr4 (3 HSPs)
chr4 (108-162)||(32920489-32920543)
chr4 (98-165)||(47970240-47970309)
chr4 (78-148)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 31564691 - 31564843
Alignment:
Q  22 aatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttat 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||    
T  31564691 aatgacatgtccacaaaagttgttttcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttat 31564790  T
Q  122 cttgctataaaaatagcttatacataagcaattttatgataagtgtttatctt 174  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31564791 cttgttataaaaatagcttatacatatgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 33385600 - 33385359
Alignment:
Q  23 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc 122  Q
    |||||||||||| |||||||||||||||||| ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||    
T  33385600 atgacatgtccataaaagttgttttcagcttttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatc 33385503  T
Q  123 --ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttct 220  Q
      ||| ||||||||| |||||||||| |||| || ||||  ||||| ||||||| |||| ||| |||||| | ||||           |||||| ||||     
T  33385502 ttttgttataaaaattgcttatacatcagcacttatatgtaaagtgcttatcttataagttttcattaggctgttta-----------tcttaggtttcc 33385414  T
Q  221 agcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 275  Q
    |||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||    
T  33385413 agcctgttcacctatctttgaattcttacataagatttctaatcgttaaatgtct 33385359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 33259890 - 33259628
Alignment:
Q  22 aatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttc 114  Q
    ||||||||||||| ||||| ||||||||||   ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||    
T  33259890 aatgacatgtccataaaagctgttttcagccattttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttc 33259791  T
Q  115 attttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtctt 212  Q
    | ||||||||  | ||||||||||||||||||||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | |||||    
T  33259790 aatttatcttttgttataaaaatagcttatacataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtctt 33259691  T
Q  213 agttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 275  Q
    || |||| |||||  | || |||||||||||||||||||||| ||| || || ||||||||||    
T  33259690 aggtttccagccttcttacatatctttgaattcttacataagatttatagttgttaaatgtct 33259628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 33416345 - 33416197
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 226  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  227 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 275  Q
    |||||||||||||||||| |||  ||||  || ||||| ||||||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtct 33416197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 134 - 281
Target Start/End: Original strand, 24631975 - 24632122
Alignment:
Q  134 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 233  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  234 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg 281  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| |||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctg 24632122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 275
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  93 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 190  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  191 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 275  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 164  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 31564838 - 31564884
Alignment:
Q  233 tatctttgaattcttacataaggtttgtaatttttaaatgtctattc 279  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattc 31564884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  233 tatctttgaattcttacataaggtttgtaatttttaaatgtc 274  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  233 tatctttgaattcttacataaggtttgtaatttttaaatgtc 274  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  233 tatctttgaattcttacataaggtttgtaatttttaaatgtc 274  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 2034496 - 2034572
Alignment:
Q  76 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagca 151  Q
    ||||||||||||  ||||||| ||||  ||| |||||| |||||||| ||| | |||||| ||||||||||||||||    
T  2034496 agcttatgaaaaaagcttatatgaaagtagtttgactttattttatctttgttgtaaaaacagcttatacataagca 2034572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 3977 - 3802
Alignment:
Q  23 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttca 115  Q
    |||||||||||| ||||| ||||||||||   ||| | |||  ||||||||||||||||||||||| ||||||||       ||||||||||||||||||    
T  3977 atgacatgtccataaaagctgttttcagccattttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttca 3878  T
Q  116 ttttatc--ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattag 189  Q
     ||||||  ||| ||||||||||||||| ||||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3877 gtttatcttttgttataaaaatagcttacacataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  233 tatctttgaattcttacataaggtttgtaatttttaaatgtc 274  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  42 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 141  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  142 tacataagcaattttatgataag 164  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  23 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 88  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  132 aaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 19113227 - 19113263
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  19113227 tataaaaatagtttatacataagcaattatatgataa 19113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  123 ttgctataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 151  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 18962109 - 18962172
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagca 151  Q
    ||||||| ||||||||| | |||| ||||||||||  | ||||||||||||| |||||||||||    
T  18962109 gcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagca 18962172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  93 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  91 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 164  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  98 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 180  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 16790466 - 16790502
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||||||||||||||||||| || ||||||||    
T  16790466 tataaaaatagcttatacataagcacttatatgataa 16790502  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 51278236 - 51278303
Alignment:
Q  98 gaaaacagtatgacttcattt--tatcttgctataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||| |||||| ||||  ||| ||| |||| ||||||||||||||| ||||||| ||||||||    
T  51278236 gaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataa 51278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  108 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 161  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 11639512 - 11639568
Alignment:
Q  115 attttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||||||||||  |||||||||||||| ||||||| | ||  |||||||||||||||    
T  11639512 attttatcttgtcataaaaatagcttacacataaggacttacatgataagtgtttat 11639568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 30014095 - 30014139
Alignment:
Q  43 gttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 87  Q
    |||||||||||||||||||| ||| ||||| | ||||||||||||    
T  30014095 gttttcagcttatttccgtaagttctctagcatagcttatgaaaa 30014139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 44422698 - 44422642
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 146  Q
    ||||||| ||||||||| |||  | |||||||| || ||||||||||||||||||||    
T  44422698 gcttatatgaaaacagtttgagattattttatcatgttataaaaatagcttatacat 44422642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 50764489 - 50764521
Alignment:
Q  132 aaatagcttatacataagcaattttatgataag 164  Q
    ||||||||||||||||||||||| |||||||||    
T  50764489 aaatagcttatacataagcaattgtatgataag 50764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  76 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 149  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  98 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 166  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  76 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 162  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  108 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  38 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 124  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  38 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 87  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 164  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 6918991 - 6918955
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||||||||||||||||||| || ||||||||    
T  6918991 tataaaaatagcttatacataagcacttatatgataa 6918955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 8536123 - 8536191
Alignment:
Q  93 tataggaaaacagtatgacttca-ttttatcttgctataaaaatagcttatacataagcaattttatga 160  Q
    |||| ||||||| | |||||||| |||||| ||| |||| |||||||||||||||||||| || |||||    
T  8536123 tatatgaaaacaatttgacttcacttttattttgttatagaaatagcttatacataagcacttatatga 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  42 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 139  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  140 tatacataagcaattttatgataa 163  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 205  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 7244693 - 7244626
Alignment:
Q  98 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||| ||||||  |||||||||  | |||| |||||||||||||||||||| || ||||||||    
T  7244693 gaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 23721461 - 23721417
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataagtgtttat 171  Q
    |||| |||||| ||||||||||||| ||| |||||||||||||||    
T  23721461 tatagaaatagtttatacataagcactttgatgataagtgtttat 23721417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 33894621 - 33894559
Alignment:
Q  90 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagca 151  Q
    ||||||| ||||||||| |||||| ||||||||||  | |||| ||||||||||||||||||||    
T  33894621 gcttatatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagca 33894559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 35536105 - 35536030
Alignment:
Q  91 cttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 164  Q
    |||||| ||||||| | |||||| ||||||||||  | |||| |||||||||||||||||||  || |||||||||    
T  35536105 cttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataag 35536030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 45078253 - 45078217
Alignment:
Q  127 tataaaaatagcttatacataagcaattttatgataa 163  Q
    ||||||||||||||||||||||||| || ||||||||    
T  45078253 tataaaaatagcttatacataagcacttatatgataa 45078217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  108 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 162  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  98 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 165  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  78 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 148  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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