View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15370_low_5 (Length: 296)
Name: NF15370_low_5
Description: NF15370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15370_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 13137805 - 13137656
Alignment:
| Q |
128 |
atgatgttttttgatatcataggcttctttcaaagataattcacgtgaagtgatgtgtttccaaatcaacctatcttcttgacattgagtaggaatggtt |
227 |
Q |
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| T |
13137805 |
atgatgttttttgaaatcataggcttctttcaaagataattcacgtgaagtgatgtgtttccaaatcaacctatcttcttgacattgagtaggaatggtt |
13137706 |
T |
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| Q |
228 |
gcttgagaaacaagtaatctcggatttgaaacaagtaatcaacctatgat |
277 |
Q |
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| T |
13137705 |
gcttgagaaacaagtaatctcggatttgaaacaagtaatcaacctatgat |
13137656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 13138031 - 13137907
Alignment:
| Q |
8 |
gatggacatcatctcttgtaaggactggaaatgaagagttacatatagcatagatgcaaaccaacaccaaaggtttactgcataaatgcattcaaaaaat |
107 |
Q |
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| T |
13138031 |
gatggaccacatatcttgtaagaattggaaatgaagagttacatatagcatagatgcaaaccaacaccaaaggtttactgcataaatgcattcaaaaaat |
13137932 |
T |
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| Q |
108 |
tgatggaaaaatgattcttcatgat |
132 |
Q |
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| T |
13137931 |
tgatggaaaaatgattcttcatgat |
13137907 |
T |
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