View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15370_low_7 (Length: 251)
Name: NF15370_low_7
Description: NF15370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15370_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 34317076 - 34316979
Alignment:
| Q |
133 |
tccctctaaactccaataaatcaacatccatcaaattagtgtttagggtttagagataacaaataagtgttcataatcttttagcatacacattctta |
230 |
Q |
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| T |
34317076 |
tccctctaaactccaacaaatcaacatccatcaaattagtgtttagggtttagagataacaaataagtgttcataatcttttagcatgcacattctta |
34316979 |
T |
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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 34317196 - 34317131
Alignment:
| Q |
13 |
aatatcagataactttcgttcactcaccactgacaattaatagtcgttacgtactggtcatatact |
78 |
Q |
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| T |
34317196 |
aatatcagataactatcgttcactcaccggtgacaattaacagtcgttacgtactggtcatatact |
34317131 |
T |
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