View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_high_2 (Length: 410)
Name: NF15371_high_2
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 25 - 389
Target Start/End: Complemental strand, 30959410 - 30959045
Alignment:
| Q |
25 |
ctttggactactgttt-gagataaataacaagcacaaatattaacaattatttttgacagaaatgaacttgagactcnnnnnnnattcaatatgaaaaat |
123 |
Q |
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| T |
30959410 |
ctttggactactgttttgagataaataacaagcacaaatattaacaattatttttgacagaaatgaacttgagactctttttttattcaatatgaaaaat |
30959311 |
T |
|
| Q |
124 |
aatagagaataacactgaaggtaatgaatcataatcttaccctagtagaccaagcgctactgcggccttatacttatactgagaagggattttcatgaat |
223 |
Q |
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| T |
30959310 |
aatagagaataacactgaaggtaatgaatcataatcttaccctagtagaccaagcgctgctgcggccttatacttatactgagaagggattttcatgaat |
30959211 |
T |
|
| Q |
224 |
gcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcacaaactaaagagatttcacaacaattcagg |
323 |
Q |
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| T |
30959210 |
gcttcgagagcaaatgctgcctcttttcgtgtaagagaaatgttgtttgacatgatttccgcgaaattcacaaactaaagagatttcacaacaattcagg |
30959111 |
T |
|
| Q |
324 |
ggatgaatttcaattattttgcaacatttaacaagtattaaatcaatattcattatctacctgaaa |
389 |
Q |
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| T |
30959110 |
ggatgaatttcaattattttgcaacatttaacaagtattaaatcaatattcattatctacctgaaa |
30959045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 11688829 - 11688939
Alignment:
| Q |
196 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
295 |
Q |
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| T |
11688829 |
cttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcaca |
11688928 |
T |
|
| Q |
296 |
aactaaagaga |
306 |
Q |
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| T |
11688929 |
aactaaagaga |
11688939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 7474443 - 7474336
Alignment:
| Q |
196 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgaaagagaaatgttgtttgacatgatttccgcgaaattcaca |
295 |
Q |
| |
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||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| | ||||| |||||||||| |
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| T |
7474443 |
cttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcaca |
7474344 |
T |
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| Q |
296 |
aactaaag |
303 |
Q |
| |
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|||||||| |
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|
| T |
7474343 |
aactaaag |
7474336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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