View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_1 (Length: 532)
Name: NF15371_low_1
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 3529647 - 3530158
Alignment:
| Q |
1 |
aaaacttgtgactctatatacaccaactttgttacatacataaccacatataaatatatcaagaaaccaaagaagaggattgtgatggaattagaacaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3529647 |
aaaacttgtgactctatatacaccaactttgttacatacataaccacatataaatatatcaagaaaccaaagaag--gattgtgatggaattagaacaag |
3529744 |
T |
|
| Q |
101 |
atcatgatctctctagtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttga |
200 |
Q |
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| T |
3529745 |
accatgatctctctagtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttga |
3529844 |
T |
|
| Q |
201 |
tggtagtgattctccaagacaacaaagtttaagaaaacatgtcaaagttcaacaccaacatcacaaaaaacaagttagaagaaggcttcatactagtaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3529845 |
tggtagtgattctccaagacaacaaagtttaagaaaacatgtcaaagttcaacaccaacatcacaaaaaacaagttagaagaaggcttcatactagtaga |
3529944 |
T |
|
| Q |
301 |
ccttatcaagaaagacttctaaatatggctgaggctagaaaagaaattgtaactgccttgaagtttcatagagcagctatgaaacaagctagtgaggaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3529945 |
ccttatcaagaaagacttctaaatatggctgaggctagaaaagaaattgtaactgccttgaagtttcatagagcagctatgaaacaagctagtgaggaag |
3530044 |
T |
|
| Q |
401 |
agcaacaacaaaagcatcaacaacaacttgaagaagaatcattattaatagtgtcttctaaccaactttcacatgttctaagttttgacattgagaagga |
500 |
Q |
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| T |
3530045 |
agcaacaacaaaagcatcaacaacaagttgaagaagaatcattattaatagtgtcttctaaccaactttcacatgttttaagttttgacattgagaagga |
3530144 |
T |
|
| Q |
501 |
tttaagtttcaatt |
514 |
Q |
| |
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|||||||||||||| |
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| T |
3530145 |
tttaagtttcaatt |
3530158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 1796159 - 1796067
Alignment:
| Q |
116 |
gtgcttacattcgaagtttggtgaaacaaataacaaccacaaaaccaaaagaaaccatgaaccctatcaaagattgtgtttttgatggtagtg |
208 |
Q |
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|||||| ||||| ||| || |||||||| ||| ||||| ||| ||||||||||||||||| ||| |||||| ||||||||| ||||||||| |
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| T |
1796159 |
gtgcttgcattcaaagcttaatgaaacaattaataaccataaagtcaaaagaaaccatgaacactaccaaagaatgtgttttttatggtagtg |
1796067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 1796804 - 1796739
Alignment:
| Q |
31 |
gttacatacataaccacatataaatatatcaagaaaccaaagaagaggattgtgatggaattagaaca |
98 |
Q |
| |
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|||| |||||| |||||||| ||||| ||||||||||||| || |||||| |||||||||||||||| |
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| T |
1796804 |
gttatatacatgaccacataaaaataaatcaagaaaccaa--aaaaggattatgatggaattagaaca |
1796739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 396
Target Start/End: Complemental strand, 48682166 - 48682035
Alignment:
| Q |
265 |
aaaaaacaagttagaagaaggcttcatactagtagaccttatcaagaaagacttctaaatatggctgaggctagaaaagaaattgtaactgccttgaagt |
364 |
Q |
| |
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|||||||| |||||||| || || || ||| || ||||||||||||||| || || |||||||| ||||| || | ||| ||||| || |||||||| | |
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| T |
48682166 |
aaaaaacaggttagaaggagactccacactgttaaaccttatcaagaaaggctactgaatatggcagaggcaaggagagagattgtcaccgccttgaaat |
48682067 |
T |
|
| Q |
365 |
ttcatagagcagctatgaaacaagctagtgag |
396 |
Q |
| |
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|||| || ||| |||||||| |||| |||||| |
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| T |
48682066 |
ttcacagggcatctatgaaagaagcaagtgag |
48682035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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