View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15371_low_10 (Length: 311)

Name: NF15371_low_10
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15371_low_10
NF15371_low_10
[»] chr5 (1 HSPs)
chr5 (1-294)||(5038748-5039041)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5039041 - 5038748
Alignment:
Q  1 ggcatggttaaagttttaccaatgccactagaaaattgcctttctcnnnnnnnccaaaaccgtgctaagtaaactactgtattcaaaatgacaagacaat 100  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  5039041 ggcatggctaaacttttaccaatgccactagaaaattgcctttctctttttttccaaaaccgtgctaagtaaactactgtattcaaaatgacaagacaat 5038942  T
Q  101 aaggagtcacatgatgtaacaatctttccattatcatacctgttgattggtataccaatagtaagaaagcaggaaatgatcaggtgctgttttgagtatt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5038941 aaggagtcacatgatgtaacaatctttccattatcatacatgttgattggtataccaatagtaagaaagcaggaaatgatcaggtgctgttttgagtatt 5038842  T
Q  201 gcaaaatgtgcgggggagagtattacaggacttcctttcttcattttaggagtttgaaatgatagaagagaacagttttctttatcatcacttt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5038841 gcaaaatgtgcgggggagagtattacaggacttcctttcttcattttaggagtttgaaatgatagaagagaacagttttctttatcatcacttt 5038748  T

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