View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_14 (Length: 241)
Name: NF15371_low_14
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28184599 - 28184822
Alignment:
| Q |
1 |
cgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagt |
100 |
Q |
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| T |
28184599 |
cgatcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagt |
28184698 |
T |
|
| Q |
101 |
tctaagtgcataacgatcttgtttaggcttttgcaaaggatcggtctcgtgtaacttcttagcggctttaacataagcgcttccatccaaaatatgctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184699 |
tctaagtgcataacgatcttgtttaggcttttgcaaaggatcagtctcgtgtaacttcttagcggctttaacataagcgcttccatccaaaatatgctcc |
28184798 |
T |
|
| Q |
201 |
ataatagcagcagcttcaatttga |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28184799 |
ataatagcagcagcttcaatttga |
28184822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 42610164 - 42610208
Alignment:
| Q |
180 |
cttccatccaaaatatgctccataatagcagcagcttcaatttga |
224 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
42610164 |
cttccatctaaaatatgttccataatagcagcagcctcaatttga |
42610208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 40944818 - 40944597
Alignment:
| Q |
3 |
atcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagttc |
102 |
Q |
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||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |||||||||| |||||||||||||||||| |||||||||| |
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| T |
40944818 |
atcaaggggttgtcgttgacagagttgatctctctctcaattgacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttc |
40944719 |
T |
|
| Q |
103 |
taagtgcataacgatcttgtttaggcttttgcaaaggatcggtctcgtgtaacttcttagcggctttaacataagcgcttccatccaaaatatgctccat |
202 |
Q |
| |
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|||| ||||| | ||||||||| || || ||||| ||||| |||| || ||||| ||| | ||||| |||||||| |||||||||||||| || ||||| |
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| T |
40944718 |
taagcgcatatctatcttgttttggtttctgcaatggatccatctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccat |
40944619 |
T |
|
| Q |
203 |
aatagcagcagcttcaatttga |
224 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
40944618 |
aatagcagcagcctcaatttga |
40944597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 40958783 - 40958562
Alignment:
| Q |
3 |
atcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagttc |
102 |
Q |
| |
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||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || ||||| |||||||||| |||||||||||||||||| |||||||||| |
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| T |
40958783 |
atcaaggggttgtcgttgacagagttgatctctctctcaattgacttggtagagaatctaatcacttcaaccaaaggaccaagccattgtggtgaagttc |
40958684 |
T |
|
| Q |
103 |
taagtgcataacgatcttgtttaggcttttgcaaaggatcggtctcgtgtaacttcttagcggctttaacataagcgcttccatccaaaatatgctccat |
202 |
Q |
| |
|
|||| ||||| | ||||||||| || || ||||| ||||| |||| || ||||| ||| | ||||| |||||||| |||||||||||||| || ||||| |
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| T |
40958683 |
taagcgcatatctatcttgttttggtttctgcaatggatccatctcatgcaactttttatctgctttgacataagcacttccatccaaaatgtgttccat |
40958584 |
T |
|
| Q |
203 |
aatagcagcagcttcaatttga |
224 |
Q |
| |
|
|||||||||||| ||||||||| |
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|
| T |
40958583 |
aatagcagcagcctcaatttga |
40958562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 43216565 - 43216426
Alignment:
| Q |
3 |
atcaaagggttgtcgttgaccgagttaatctctctttcaatagacttggtcgaaaatcttatcacttcaatcaaaggaccaagccattgaggtgaagttc |
102 |
Q |
| |
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|||| ||| |||||||| || || || ||||| |||||||| || ||||||||||| | || ||||||||| ||||| ||||| ||||| |||||| |
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| T |
43216565 |
atcagaggattgtcgttcactgaatttatctccctttcaatcgatttggtcgaaaaccggataacttcaatctgtggaccgagccactgaggagaagtta |
43216466 |
T |
|
| Q |
103 |
taagtgcataacgatcttgtttaggcttttgcaaaggatc |
142 |
Q |
| |
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||| ||||||||||||| | ||||||| ||||| ||||| |
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| T |
43216465 |
caagagcataacgatcttttctaggcttctgcaatggatc |
43216426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 40549452 - 40549407
Alignment:
| Q |
86 |
ccattgaggtgaagttctaagtgcataacgatcttgtttaggcttt |
131 |
Q |
| |
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|||||| |||||||| ||||||||||| | |||||||||||||||| |
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| T |
40549452 |
ccattgcggtgaagtcctaagtgcatatctatcttgtttaggcttt |
40549407 |
T |
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