View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_16 (Length: 230)
Name: NF15371_low_16
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_16 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13852 - 14062
Alignment:
| Q |
1 |
taatgtacctctttaaagatctgcacctctctttctcttctcctgcttctgttttctgcgacaataaatcagcaatctacctcgcacataaccccagttt |
100 |
Q |
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| T |
13852 |
taatgtacctctttaaagatctgcacctctctttctcttctcctgcttctgttttctgcgacaataaatcagccatctacctcgcacataaccccagttt |
13951 |
T |
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| Q |
101 |
ccatgaacgtactaaacacattgaaatagattgtcacatcattagagagaagattcaaaatggcctgctgcgactatttcccataccttctgccgcgcaa |
200 |
Q |
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| T |
13952 |
ccatgaacgtactaaacacattgaaatagattgtcacatcattagagagaagattcaaaatggtctgctgcgactatttcccataccttctgctgcgcaa |
14051 |
T |
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| Q |
201 |
acagccgacgt |
211 |
Q |
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||||||||||| |
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| T |
14052 |
acagccgacgt |
14062 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 43010867 - 43010780
Alignment:
| Q |
60 |
gacaataaatcagcaatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcacatcattagaga |
148 |
Q |
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| T |
43010867 |
gacaatgaatcagacatcgaccttgcccataacacca-ttaccatgaacgtattaaacacgttgaaatagattgtcacatcatcagaga |
43010780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 38825646 - 38825738
Alignment:
| Q |
68 |
atcagcaatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcacatcattagagagaagattcaaaa |
160 |
Q |
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| T |
38825646 |
atcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatagattgccatgtaattagagaaaagattcaaaa |
38825738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 46604576 - 46604668
Alignment:
| Q |
68 |
atcagcaatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcacatcattagagagaagattcaaaa |
160 |
Q |
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| T |
46604576 |
atcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatagattgccatgtaattagagaaaagattcaaaa |
46604668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 17881678 - 17881586
Alignment:
| Q |
68 |
atcagcaatctacctcgcacataaccccagtttccatgaacgtactaaacacattgaaatagattgtcacatcattagagagaagattcaaaa |
160 |
Q |
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||||||||| || || || |||||||| | ||| ||||| ||||| ||||| ||||| |||||||| || | |||||||| ||||||||||| |
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| T |
17881678 |
atcagcaatttatcttgctcataaccctacttttcatgagcgtacaaaacatattgagatagattgccatgtaattagagaaaagattcaaaa |
17881586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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