View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_17 (Length: 219)
Name: NF15371_low_17
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3423864 - 3423648
Alignment:
| Q |
1 |
taaagtcaaattattttcatataacctataagttgcttacacaaattggttctcgtctaaatatatatacatactattgatnnnnnnnntattggtgcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3423864 |
taaagtcaaattattttcatataacctataagttgcttacacaaattggttctcgtctaaatatatatacatactattgataaaaaa--tattggtgcta |
3423767 |
T |
|
| Q |
101 |
tgagtcgcccctaacacccgtgcttagggtcatcaccgtttgtacccgtggattagatcaaataagactttaaaatacaaatgaaaagtatatgagcata |
200 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3423766 |
tgagtcgccccaaacacccgcgcttagggtcatcaccgtttgtaccggtagattagatcaaataagactttaaaatacaaatgaaaagtatatgagcata |
3423667 |
T |
|
| Q |
201 |
cctttttgtcatctctgct |
219 |
Q |
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||||||||||||||||||| |
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| T |
3423666 |
cctttttgtcatctctgct |
3423648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 11917533 - 11917743
Alignment:
| Q |
1 |
taaagtcaaattattttcatataacctataagttgcttacacaaattggttctcgtctaaatatatatacatactattgatnnnnnnnntattggtgcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||||| |||| |
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| T |
11917533 |
taaagtcaaattattttcatataacctataagttgcttacaaaaattggttctcgtctaaatatttatacatactattaa---aaaaaatattgccgcta |
11917629 |
T |
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| Q |
101 |
tgagtcgcccctaacacccgtgcttagggtcatcaccgtttgtacccgtggattagatcaaataagactttaaaatacaaatgaaaagtatatgagcata |
200 |
Q |
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| T |
11917630 |
tgattcgcccctaccacctgcgcttagggtcatcactttttgtaccagtagataaattcaaataagcctttaaaacacaaatg-aaagtatatgagccta |
11917728 |
T |
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| Q |
201 |
cctttttgtcatctc |
215 |
Q |
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||||||||||||||| |
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| T |
11917729 |
cctttttgtcatctc |
11917743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4071856 - 4071890
Alignment:
| Q |
1 |
taaagtcaaattattttcatataacctataagttg |
35 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
4071856 |
taaagtcaaattattttcatataagctataagttg |
4071890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49219113 - 49219147
Alignment:
| Q |
1 |
taaagtcaaattattttcatataacctataagttg |
35 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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|
| T |
49219113 |
taaagtcaaattattttcatataagctataagttg |
49219147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24895330 - 24895373
Alignment:
| Q |
1 |
taaagtcaaattattttcatataacctataagttgcttacacaa |
44 |
Q |
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| T |
24895330 |
taaagtcaaattattttcatataagctataagttgttttcacaa |
24895373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24909638 - 24909672
Alignment:
| Q |
1 |
taaagtcaaattattttcatataacctataagttg |
35 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
24909638 |
taaagtcaaattattttcatataagctataagttg |
24909672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 2865754 - 2865721
Alignment:
| Q |
2 |
aaagtcaaattattttcatataacctataagttg |
35 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
2865754 |
aaagtcaaattgttttcatataacctataagttg |
2865721 |
T |
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