View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15371_low_18 (Length: 216)
Name: NF15371_low_18
Description: NF15371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15371_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 5039234 - 5039038
Alignment:
| Q |
20 |
gtttgtttacattaataatgtaacaatgttcaaaatgacacttctgttacaacttttgcgggcagaaaatgattaattatcaatgcaatgtgactctttg |
119 |
Q |
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| T |
5039234 |
gtttgtttacattaataatgtaacaatgttcaaaatgacacttctgttacaacttttgcgggcagaaaatgattaatcatcaatgcaatgtgactctttg |
5039135 |
T |
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| Q |
120 |
actctactgtgtgagtatcactgttatgctatattgtgtggtcaaatggagattggcactgataagtataaccagtagatgattgatatgaacggca |
216 |
Q |
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| T |
5039134 |
actctactgtgtgagtatcactgttatgctatattgtgtgttcaaatggagattggcactgataagtataaccagtagatgattgatatgaacggca |
5039038 |
T |
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